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The map label for this gene is lytD [H]

Identifier: 28210001

GI number: 28210001

Start: 201870

End: 203345

Strand: Direct

Name: lytD [H]

Synonym: CTC00234

Alternate gene names: 28210001

Gene position: 201870-203345 (Clockwise)

Preceding gene: 28210000

Following gene: 28210004

Centisome position: 7.21

GC content: 29.47

Gene sequence:

>1476_bases
ATGAAAATCAGAAAGGTTATTATATCATCACTTATATTTTCCATGTGTTTAGGAAGCAAAGTGTTGGCTAGTAATAAATT
TCAAAGTAAAGTGAATATTTCAATAGATAAGGTTTGGACAGTAAAGTTTAATTTTGGGTTGAATAGAGATACAATAAATA
ATAAAAATATATATGTAACAGACACAAACGGTCAAAAAATTAATGTTAATATTACTCCAGGTAAAGATGAGAATACAATA
GACATAGTCCCAATAACAGGTGGATATATACCAGCGAAAACTTATGTTTTAAATTTAGGAACAGGAATTGAATCTATAGG
AGGTAAAAGTTTAAAAGAACCAACAAAAATGAATTTTACCATAGAAGGTAAGAATAAAGACGGATCAAATTATATAGATT
TACCTAAAGTTACAAATGTTAAGATGGAGAAGGAACCTATATTGCCAGGACAGACACAGACATTTGATTTAACTTCAACA
GGAGCTAATCATGTAGAATATAGAATATTTGTTAGTAAATATACATATGGTGTGGACAAGTTTGAAGATTTTAAAGAAGT
CACTAATGGTTATATAGGCAACAATAAAATAACATCAAATAAAACTTTTGAAGCAGGTAATGATGGAGAAAAATATAAAG
TTATTATATATGTTAAAAGAGCAGGGCAAAAAGGATTATACAAGGATGAGCTTACAGATTTTGATAATTATTATGTAGAT
TATTTTAGATGTGTGAATAGGATAAACAACTCCAATATAACCAATATAAATTATAATAACACAATTGATGAAGTTCTTAA
TAAACAAGCACTTCCTAGCGTTTCTGTAACAGATGAAGGACCTTCAGCTTGGGTTGGAGCTAGTAGAAATCAAATAAAGT
ATTATTTAAATCCTGAAAACTTTACAGATGAGTATGGTAAATATATGTTTTTAAAATTAAGCTATATCGATGATAGCATT
ACAGCAGAAGACATAGATGGAATTTTAAAGGGAAAAGGAATATTAGAAGGAAAAGGACAAGCCTTTGTAAATGCAGGAAA
AACTCATAATATAAATCCAATTTATTTAGCCTCACACGCATTATTAGAAACAGGTAACGGTAAGTCTAAATTAGCTAATG
GAATTGAAGTAACAGGTGATGATGGAAAGAAAAAAGTCTATAATATGTTTGGAATAAAAGCATTTGATGCAAATCCAGAT
AAATATGGATCCGAATTTGCGTATGAGCAAAAATGGGTTACTCCAGAAGCTGCCATAATAGGTGGAGCTAAATATATAGC
AGAGAAGTATGTAAATAGTGCTGAAAATCCAAGGGAAACTTTATATGAAATGAAGTGGAATCCATACAGACCAGGATCAT
ATCAGTATGCTACAGATATAGGATGGGCATATAAACAAGTTAAAAATATAAAAGATTTAATGGATAAGTGTGAGAATCCA
ACTTTGGTATTTAAAAAGCCTGTATACAAAAAATAG

Upstream 100 bases:

>100_bases
ATCAATTTAAGTATAATATGTTCTATTTCACCATAGAAAAATTTTGTAATAGCTTATATAATTATAAATATAAATATATT
TTGGTAAGGGGGAATTTTAC

Downstream 100 bases:

>100_bases
CTTATATATTTAAATTACCGTGCATTTTTAATGCACGGCTTATTTTTAATTTAAGTTCAACTCATCTAAAGATTCGTCTT
CTACAAAAGGAGCATAGAAT

Product: putative cell wall hydrolase

Products: NA

Alternate protein names: Cell wall-associated polypeptide 90; CWBP90 [H]

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MKIRKVIISSLIFSMCLGSKVLASNKFQSKVNISIDKVWTVKFNFGLNRDTINNKNIYVTDTNGQKINVNITPGKDENTI
DIVPITGGYIPAKTYVLNLGTGIESIGGKSLKEPTKMNFTIEGKNKDGSNYIDLPKVTNVKMEKEPILPGQTQTFDLTST
GANHVEYRIFVSKYTYGVDKFEDFKEVTNGYIGNNKITSNKTFEAGNDGEKYKVIIYVKRAGQKGLYKDELTDFDNYYVD
YFRCVNRINNSNITNINYNNTIDEVLNKQALPSVSVTDEGPSAWVGASRNQIKYYLNPENFTDEYGKYMFLKLSYIDDSI
TAEDIDGILKGKGILEGKGQAFVNAGKTHNINPIYLASHALLETGNGKSKLANGIEVTGDDGKKKVYNMFGIKAFDANPD
KYGSEFAYEQKWVTPEAAIIGGAKYIAEKYVNSAENPRETLYEMKWNPYRPGSYQYATDIGWAYKQVKNIKDLMDKCENP
TLVFKKPVYKK

Sequences:

>Translated_491_residues
MKIRKVIISSLIFSMCLGSKVLASNKFQSKVNISIDKVWTVKFNFGLNRDTINNKNIYVTDTNGQKINVNITPGKDENTI
DIVPITGGYIPAKTYVLNLGTGIESIGGKSLKEPTKMNFTIEGKNKDGSNYIDLPKVTNVKMEKEPILPGQTQTFDLTST
GANHVEYRIFVSKYTYGVDKFEDFKEVTNGYIGNNKITSNKTFEAGNDGEKYKVIIYVKRAGQKGLYKDELTDFDNYYVD
YFRCVNRINNSNITNINYNNTIDEVLNKQALPSVSVTDEGPSAWVGASRNQIKYYLNPENFTDEYGKYMFLKLSYIDDSI
TAEDIDGILKGKGILEGKGQAFVNAGKTHNINPIYLASHALLETGNGKSKLANGIEVTGDDGKKKVYNMFGIKAFDANPD
KYGSEFAYEQKWVTPEAAIIGGAKYIAEKYVNSAENPRETLYEMKWNPYRPGSYQYATDIGWAYKQVKNIKDLMDKCENP
TLVFKKPVYKK
>Mature_491_residues
MKIRKVIISSLIFSMCLGSKVLASNKFQSKVNISIDKVWTVKFNFGLNRDTINNKNIYVTDTNGQKINVNITPGKDENTI
DIVPITGGYIPAKTYVLNLGTGIESIGGKSLKEPTKMNFTIEGKNKDGSNYIDLPKVTNVKMEKEPILPGQTQTFDLTST
GANHVEYRIFVSKYTYGVDKFEDFKEVTNGYIGNNKITSNKTFEAGNDGEKYKVIIYVKRAGQKGLYKDELTDFDNYYVD
YFRCVNRINNSNITNINYNNTIDEVLNKQALPSVSVTDEGPSAWVGASRNQIKYYLNPENFTDEYGKYMFLKLSYIDDSI
TAEDIDGILKGKGILEGKGQAFVNAGKTHNINPIYLASHALLETGNGKSKLANGIEVTGDDGKKKVYNMFGIKAFDANPD
KYGSEFAYEQKWVTPEAAIIGGAKYIAEKYVNSAENPRETLYEMKWNPYRPGSYQYATDIGWAYKQVKNIKDLMDKCENP
TLVFKKPVYKK

Specific function: Cell wall hydrolase not involved in cell autolysis, competence, sporulation or germination. It hydrolyzes the beta-1,4 glycan bond between the N-acetylglucosaminyl and the N- acetylmuramoyl residues in the glycan chain [H]

COG id: COG4193

COG function: function code G; Beta- N-acetylglucosaminidase

Gene ontology:

Cell location: Secreted. Secreted, cell wall [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 73 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013338
- InterPro:   IPR002901
- InterPro:   IPR003646
- InterPro:   IPR013247
- InterPro:   IPR007730 [H]

Pfam domain/function: PF01832 Glucosaminidase; PF08239 SH3_3; PF05036 SPOR [H]

EC number: =3.2.1.96 [H]

Molecular weight: Translated: 55234; Mature: 55234

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRKVIISSLIFSMCLGSKVLASNKFQSKVNISIDKVWTVKFNFGLNRDTINNKNIYVT
CHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCEEEEE
DTNGQKINVNITPGKDENTIDIVPITGGYIPAKTYVLNLGTGIESIGGKSLKEPTKMNFT
ECCCCEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEECCCHHHCCCCCCCCCCEEEEE
IEGKNKDGSNYIDLPKVTNVKMEKEPILPGQTQTFDLTSTGANHVEYRIFVSKYTYGVDK
EECCCCCCCCEECCCCCCCCEECCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCHH
FEDFKEVTNGYIGNNKITSNKTFEAGNDGEKYKVIIYVKRAGQKGLYKDELTDFDNYYVD
HHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCHHHHHH
YFRCVNRINNSNITNINYNNTIDEVLNKQALPSVSVTDEGPSAWVGASRNQIKYYLNPEN
HHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCEEECCCCCCCEECCCCCCEEEEECCCC
FTDEYGKYMFLKLSYIDDSITAEDIDGILKGKGILEGKGQAFVNAGKTHNINPIYLASHA
CCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCEEECCCCEEEECCCCCCCCEEEEEEEE
LLETGNGKSKLANGIEVTGDDGKKKVYNMFGIKAFDANPDKYGSEFAYEQKWVTPEAAII
EEECCCCHHHHCCCCEEECCCCCHHHHHHHCEEEECCCCCCCCCCCCHHHCCCCCCHHEE
GGAKYIAEKYVNSAENPRETLYEMKWNPYRPGSYQYATDIGWAYKQVKNIKDLMDKCENP
CCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCC
TLVFKKPVYKK
EEEECCCCCCC
>Mature Secondary Structure
MKIRKVIISSLIFSMCLGSKVLASNKFQSKVNISIDKVWTVKFNFGLNRDTINNKNIYVT
CHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCEEEEE
DTNGQKINVNITPGKDENTIDIVPITGGYIPAKTYVLNLGTGIESIGGKSLKEPTKMNFT
ECCCCEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEECCCHHHCCCCCCCCCCEEEEE
IEGKNKDGSNYIDLPKVTNVKMEKEPILPGQTQTFDLTSTGANHVEYRIFVSKYTYGVDK
EECCCCCCCCEECCCCCCCCEECCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCHH
FEDFKEVTNGYIGNNKITSNKTFEAGNDGEKYKVIIYVKRAGQKGLYKDELTDFDNYYVD
HHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCHHHHHH
YFRCVNRINNSNITNINYNNTIDEVLNKQALPSVSVTDEGPSAWVGASRNQIKYYLNPEN
HHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCEEECCCCCCCEECCCCCCEEEEECCCC
FTDEYGKYMFLKLSYIDDSITAEDIDGILKGKGILEGKGQAFVNAGKTHNINPIYLASHA
CCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCEEECCCCEEEECCCCCCCCEEEEEEEE
LLETGNGKSKLANGIEVTGDDGKKKVYNMFGIKAFDANPDKYGSEFAYEQKWVTPEAAII
EEECCCCHHHHCCCCEEECCCCCHHHHHHHCEEEECCCCCCCCCCCCHHHCCCCCCHHEE
GGAKYIAEKYVNSAENPRETLYEMKWNPYRPGSYQYATDIGWAYKQVKNIKDLMDKCENP
CCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCC
TLVFKKPVYKK
EEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934877; 7581999; 9384377 [H]