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The map label for this gene is tdcF [C]

Identifier: 28210000

GI number: 28210000

Start: 201266

End: 201649

Strand: Direct

Name: tdcF [C]

Synonym: CTC00233

Alternate gene names: 28210000

Gene position: 201266-201649 (Clockwise)

Preceding gene: 28209999

Following gene: 28210001

Centisome position: 7.19

GC content: 32.81

Gene sequence:

>384_bases
ATGAAAAAAGTAATAAACACAGAATTAGCACCAAAGGCTATAGGACCTTATTCACAAGGTATTATGATAGGAGACTTAGC
ATTTTTATCAGGACAAATTCCAGTAGATCCTGCCACAGGGGAACTAGCTACAGGAGATGATCCAGTTGTAGCTCAAGCTA
ATCAATCCCTAAAGAATGTTCAAAGTATATTAGAATCACAAGGTATGTCTTTTGATAATGTAATAAAGACTACAGTATTT
ATTGCTAACATGGATGACTTTGCAAAAATAAATCAAGTATATGCACAATACTTTAAAGAACCATATCCAGCAAGATCTTG
CGTACAAGTAGCAAAATTACCTAAGGAAGCATTAGTAGAAATAGAAGTTATAGCTAAAAAATAA

Upstream 100 bases:

>100_bases
GATCATATAGAATAATCAAAGTAGATAGACAAAATGTAAAAATAAGCAATAGTTATAAAAACTATATAATGAATATAAAT
ATTTAGGAGGTATTAATATT

Downstream 100 bases:

>100_bases
CTTCATAAATATAATTGAATAAAAAATATAAGATGGCGGTTGCGAAATAATTTTAATGACAAAGTTATTTTGTAGCCGCC
ATAAATATATAATTAGTTGT

Product: translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKKVINTELAPKAIGPYSQGIMIGDLAFLSGQIPVDPATGELATGDDPVVAQANQSLKNVQSILESQGMSFDNVIKTTVF
IANMDDFAKINQVYAQYFKEPYPARSCVQVAKLPKEALVEIEVIAKK

Sequences:

>Translated_127_residues
MKKVINTELAPKAIGPYSQGIMIGDLAFLSGQIPVDPATGELATGDDPVVAQANQSLKNVQSILESQGMSFDNVIKTTVF
IANMDDFAKINQVYAQYFKEPYPARSCVQVAKLPKEALVEIEVIAKK
>Mature_127_residues
MKKVINTELAPKAIGPYSQGIMIGDLAFLSGQIPVDPATGELATGDDPVVAQANQSLKNVQSILESQGMSFDNVIKTTVF
IANMDDFAKINQVYAQYFKEPYPARSCVQVAKLPKEALVEIEVIAKK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=47.2, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI87082213, Length=130, Percent_Identity=53.0769230769231, Blast_Score=134, Evalue=2e-33,
Organism=Escherichia coli, GI87082396, Length=130, Percent_Identity=50, Blast_Score=132, Evalue=5e-33,
Organism=Escherichia coli, GI1787245, Length=113, Percent_Identity=30.9734513274336, Blast_Score=69, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=51.6129032258064, Blast_Score=136, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=51.6129032258064, Blast_Score=136, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=51.6129032258064, Blast_Score=136, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=41.3223140495868, Blast_Score=98, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=43.6893203883495, Blast_Score=89, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=40.8, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13774; Mature: 13774

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVINTELAPKAIGPYSQGIMIGDLAFLSGQIPVDPATGELATGDDPVVAQANQSLKNV
CCCCCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
QSILESQGMSFDNVIKTTVFIANMDDFAKINQVYAQYFKEPYPARSCVQVAKLPKEALVE
HHHHHHCCCCHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHH
IEVIAKK
HEEEECC
>Mature Secondary Structure
MKKVINTELAPKAIGPYSQGIMIGDLAFLSGQIPVDPATGELATGDDPVVAQANQSLKNV
CCCCCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
QSILESQGMSFDNVIKTTVFIANMDDFAKINQVYAQYFKEPYPARSCVQVAKLPKEALVE
HHHHHHCCCCHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHH
IEVIAKK
HEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]