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The map label for this gene is ydhO [H]

Identifier: 28199398

GI number: 28199398

Start: 1765482

End: 1766120

Strand: Reverse

Name: ydhO [H]

Synonym: PD1518

Alternate gene names: 28199398

Gene position: 1766120-1765482 (Counterclockwise)

Preceding gene: 28199402

Following gene: 28199397

Centisome position: 70.09

GC content: 56.03

Gene sequence:

>639_bases
GTGACAGCCATGTTAAGCATGGCTTGTCGACGGGCGGTGCGTACTGGGGCGCACTGTGATGAGGGTGGAAACGTAAAGGC
GTTCGATTATCCTGACTCCATGAATAACAAGCCAGTTCCCATTGTTTTGCGGAGGACGTCCATTGGTTCGATCCTCTTCA
TCCTCCCTGCAATGCTGATTGGTTGCAGTCGCGTGCCGGTCAAAACACAGCCCAAGCTCGCTTCAGTCAACGTGTGGCCC
CTCACAACCCCAGCCAATCCAGAGGCAGCCAATGAGGTCGTGATGCGTGCCTTGAGCTTGGTTGGCACTCCGTACCGCTT
CGGTGGCAACACCCCTGAGAGTGGATTCGACTGCAGCGGTTTAGTCAGCTACGTCTACCGCGATGCACTCGACTTGCGTC
TACCGCGCACTTCCTACGAGCTGGCCGCAGTGCAGGGTCCCAAGATTGACGCTGAACAACTGACCACTGGTGATTTGGTG
TTCTTTGGGAGTGCCCGTAGTGTCACTCACGTGGGCATCTACCTCAGTGAAGGTCGCTTCGTACATGCCCCCAGCAGTGG
TGGCACCGTGCGTTTGGATCGGCTTGATACCCCTTACTGGAGGGATCATTACACTGGCGCAAAACGTGTTTTACGCTGA

Upstream 100 bases:

>100_bases
CTTTCGAACGGCGCTTGACCGACCTCGGAAACAATGTAGTGAAAGCGAACAACACAGTCTTTTTCTATCTTCATATCTCA
CTCGTTGATGGGGCTATACG

Downstream 100 bases:

>100_bases
ATTGCAACAATCATCACTATACATAAAACGGAAATTTAACCTTTTTTGAACCTTATGCGAGCTGGACCGGGGCATCATCC
ACCCTTACTTTCGAAACACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTAMLSMACRRAVRTGAHCDEGGNVKAFDYPDSMNNKPVPIVLRRTSIGSILFILPAMLIGCSRVPVKTQPKLASVNVWP
LTTPANPEAANEVVMRALSLVGTPYRFGGNTPESGFDCSGLVSYVYRDALDLRLPRTSYELAAVQGPKIDAEQLTTGDLV
FFGSARSVTHVGIYLSEGRFVHAPSSGGTVRLDRLDTPYWRDHYTGAKRVLR

Sequences:

>Translated_212_residues
MTAMLSMACRRAVRTGAHCDEGGNVKAFDYPDSMNNKPVPIVLRRTSIGSILFILPAMLIGCSRVPVKTQPKLASVNVWP
LTTPANPEAANEVVMRALSLVGTPYRFGGNTPESGFDCSGLVSYVYRDALDLRLPRTSYELAAVQGPKIDAEQLTTGDLV
FFGSARSVTHVGIYLSEGRFVHAPSSGGTVRLDRLDTPYWRDHYTGAKRVLR
>Mature_211_residues
TAMLSMACRRAVRTGAHCDEGGNVKAFDYPDSMNNKPVPIVLRRTSIGSILFILPAMLIGCSRVPVKTQPKLASVNVWPL
TTPANPEAANEVVMRALSLVGTPYRFGGNTPESGFDCSGLVSYVYRDALDLRLPRTSYELAAVQGPKIDAEQLTTGDLVF
FGSARSVTHVGIYLSEGRFVHAPSSGGTVRLDRLDTPYWRDHYTGAKRVLR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=131, Percent_Identity=41.2213740458015, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1786421, Length=121, Percent_Identity=42.9752066115703, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1788001, Length=114, Percent_Identity=45.6140350877193, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1788501, Length=110, Percent_Identity=41.8181818181818, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 23119; Mature: 22988

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAMLSMACRRAVRTGAHCDEGGNVKAFDYPDSMNNKPVPIVLRRTSIGSILFILPAMLI
CCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
GCSRVPVKTQPKLASVNVWPLTTPANPEAANEVVMRALSLVGTPYRFGGNTPESGFDCSG
CCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LVSYVYRDALDLRLPRTSYELAAVQGPKIDAEQLTTGDLVFFGSARSVTHVGIYLSEGRF
HHHHHHHHHHHEECCCCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEEEEEECCEE
VHAPSSGGTVRLDRLDTPYWRDHYTGAKRVLR
EECCCCCCEEEEECCCCCCHHHHHCHHHHHCC
>Mature Secondary Structure 
TAMLSMACRRAVRTGAHCDEGGNVKAFDYPDSMNNKPVPIVLRRTSIGSILFILPAMLI
CHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
GCSRVPVKTQPKLASVNVWPLTTPANPEAANEVVMRALSLVGTPYRFGGNTPESGFDCSG
CCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LVSYVYRDALDLRLPRTSYELAAVQGPKIDAEQLTTGDLVFFGSARSVTHVGIYLSEGRF
HHHHHHHHHHHEECCCCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEEEEEECCEE
VHAPSSGGTVRLDRLDTPYWRDHYTGAKRVLR
EECCCCCCEEEEECCCCCCHHHHHCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]