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The map label for this gene is ydhO [H]

Identifier: 28199397

GI number: 28199397

Start: 1764588

End: 1765436

Strand: Reverse

Name: ydhO [H]

Synonym: PD1517

Alternate gene names: 28199397

Gene position: 1765436-1764588 (Counterclockwise)

Preceding gene: 28199398

Following gene: 77747701

Centisome position: 70.06

GC content: 52.77

Gene sequence:

>849_bases
TTGAACCTTATGCGAGCTGGACCGGGGCATCATCCACCCTTACTTTCGAAACACTGTGATGCTCGCGTGAAGATAAAAGA
CGAACAGTTTAAATCTAACCCCGCTGTCCATCCATTTCAGAAGCCGCTTTATCTACTGTGCTCAACAACGCTGTTATTGG
GTCCTATATCGGCTCTGGCGCAGGATATGACGCAACTCCCGGCTACTGTTGCCCTTCATGCCACTCCCGAGGGTGCTCAG
GGTGAGTCTGCTACTGCTAATACTACTGCTGTTGCCGCTACTCCCCCTCGCAACCGTACTGATGCGGCTACCACTGTTGC
TTTGGCCGCATTGCTGCCGCATCTGGCCAACAACGATACGATCCCGCTGATGGATCGTTCTGCCCTGTTTACTGGTGACA
TGAATCGTGCGTTGACTGGTTACGATGTATCCCAGAGCACCCTTGCAGCGGCCGAGAAAGCAGTCACCGATAAAAAGACC
CAAGTAGTCCTCAGGCGTGCAATGAACCTGCTTGGTACCCCCTATCGCTGGGGAGGCGCTCGTCCTGGAGGTTTTGATTG
CAGTGGCTTAGTCAACTATGTGTTCCGTACTGCGCTTGGGATCCAGTTACCGCGCGTCTCCCGTGATATGGCGCGTCACT
CTGGCGGTGAGTTGATTAAGGATCGTAAGGAGGTACGCACCGGTGACTTGGTGTTCTTCGGTAAAGCTGGTCGTATTACC
CATGTAGGGATTGTTCTGGATAAAGGGTTATTTCTGCACGCTCCCAGAACTGGTAAAGACGTTCGTATGGATTCCTTCTC
CAGTGGCTACTGGAGCCATAAATTTATCCAGGCGCGTCGCGTCCTTTGA

Upstream 100 bases:

>100_bases
TGATACCCCTTACTGGAGGGATCATTACACTGGCGCAAAACGTGTTTTACGCTGAATTGCAACAATCATCACTATACATA
AAACGGAAATTTAACCTTTT

Downstream 100 bases:

>100_bases
ATGATTCATACACTTTACAGTGTCATCGGATTGAAGAGGAGAGAGTATCTTGAATGCACTTTTTTCTTTGGAATCAGAAG
AATGGAGCATCTGCCATCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNLMRAGPGHHPPLLSKHCDARVKIKDEQFKSNPAVHPFQKPLYLLCSTTLLLGPISALAQDMTQLPATVALHATPEGAQ
GESATANTTAVAATPPRNRTDAATTVALAALLPHLANNDTIPLMDRSALFTGDMNRALTGYDVSQSTLAAAEKAVTDKKT
QVVLRRAMNLLGTPYRWGGARPGGFDCSGLVNYVFRTALGIQLPRVSRDMARHSGGELIKDRKEVRTGDLVFFGKAGRIT
HVGIVLDKGLFLHAPRTGKDVRMDSFSSGYWSHKFIQARRVL

Sequences:

>Translated_282_residues
MNLMRAGPGHHPPLLSKHCDARVKIKDEQFKSNPAVHPFQKPLYLLCSTTLLLGPISALAQDMTQLPATVALHATPEGAQ
GESATANTTAVAATPPRNRTDAATTVALAALLPHLANNDTIPLMDRSALFTGDMNRALTGYDVSQSTLAAAEKAVTDKKT
QVVLRRAMNLLGTPYRWGGARPGGFDCSGLVNYVFRTALGIQLPRVSRDMARHSGGELIKDRKEVRTGDLVFFGKAGRIT
HVGIVLDKGLFLHAPRTGKDVRMDSFSSGYWSHKFIQARRVL
>Mature_282_residues
MNLMRAGPGHHPPLLSKHCDARVKIKDEQFKSNPAVHPFQKPLYLLCSTTLLLGPISALAQDMTQLPATVALHATPEGAQ
GESATANTTAVAATPPRNRTDAATTVALAALLPHLANNDTIPLMDRSALFTGDMNRALTGYDVSQSTLAAAEKAVTDKKT
QVVLRRAMNLLGTPYRWGGARPGGFDCSGLVNYVFRTALGIQLPRVSRDMARHSGGELIKDRKEVRTGDLVFFGKAGRIT
HVGIVLDKGLFLHAPRTGKDVRMDSFSSGYWSHKFIQARRVL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=144, Percent_Identity=41.6666666666667, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1786421, Length=126, Percent_Identity=38.8888888888889, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1788501, Length=179, Percent_Identity=34.0782122905028, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788001, Length=112, Percent_Identity=43.75, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 30531; Mature: 30531

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLMRAGPGHHPPLLSKHCDARVKIKDEQFKSNPAVHPFQKPLYLLCSTTLLLGPISALA
CCCCCCCCCCCCCHHHHCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QDMTQLPATVALHATPEGAQGESATANTTAVAATPPRNRTDAATTVALAALLPHLANNDT
HHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
IPLMDRSALFTGDMNRALTGYDVSQSTLAAAEKAVTDKKTQVVLRRAMNLLGTPYRWGGA
CEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RPGGFDCSGLVNYVFRTALGIQLPRVSRDMARHSGGELIKDRKEVRTGDLVFFGKAGRIT
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCEE
HVGIVLDKGLFLHAPRTGKDVRMDSFSSGYWSHKFIQARRVL
EEEEEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MNLMRAGPGHHPPLLSKHCDARVKIKDEQFKSNPAVHPFQKPLYLLCSTTLLLGPISALA
CCCCCCCCCCCCCHHHHCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QDMTQLPATVALHATPEGAQGESATANTTAVAATPPRNRTDAATTVALAALLPHLANNDT
HHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
IPLMDRSALFTGDMNRALTGYDVSQSTLAAAEKAVTDKKTQVVLRRAMNLLGTPYRWGGA
CEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RPGGFDCSGLVNYVFRTALGIQLPRVSRDMARHSGGELIKDRKEVRTGDLVFFGKAGRIT
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCEE
HVGIVLDKGLFLHAPRTGKDVRMDSFSSGYWSHKFIQARRVL
EEEEEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]