Click here to switch to the map view.

The map label for this gene is traD [H]

Identifier: 28198852

GI number: 28198852

Start: 1156095

End: 1156457

Strand: Reverse

Name: traD [H]

Synonym: PD0952

Alternate gene names: 28198852

Gene position: 1156457-1156095 (Counterclockwise)

Preceding gene: 28198853

Following gene: 77747673

Centisome position: 45.89

GC content: 46.83

Gene sequence:

>363_bases
ATGAGTATGAACATTCCAAAGATTTATAACGAAAAAACTGGTTCTGATGACGCGATGAACGTAACGGACAATTTCCGTGA
AAAGTTGATCAATGCCGAGACTCCAGGCTTTCAGGCCGAATGTGATCCGAACGAGGCAGATTGCGCAGGTGTGTTTGTAG
AGGACGCATTGAGCGAGGAAGATGCGCTTGATACTGCTATTGATCTAAACGACGCACAAAGTGGTGATGTGCCGGTGTTC
ATTGAGTACGGCGAAGGTCTTGATGTTCCCAAGAACTTCACCAGAGTCAATGCGTATGAGCTGCTAGGCAAACGGCAAGG
AGAATCCGTCAAAGATGCCTTGGAGCGTTCAAATCCTCAATGA

Upstream 100 bases:

>100_bases
TGGTACCAATTTCTGATCGTGCAGTGGCTATCTCACTTACTCGCAAACGTATCCCGACGCCAATGGAAGACCCTAACTAC
ACCATCCAACGTAAGGAGAC

Downstream 100 bases:

>100_bases
CAATCATGGCGTGGGATTTTTTGCTGATAGTCGTTGTAACCTTAGTGAAGGTAGTCCTTACGGACGGATATTTGCGGTTT
CTGTCTAGATTTAAAACTGT

Product: conjugal transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MSMNIPKIYNEKTGSDDAMNVTDNFREKLINAETPGFQAECDPNEADCAGVFVEDALSEEDALDTAIDLNDAQSGDVPVF
IEYGEGLDVPKNFTRVNAYELLGKRQGESVKDALERSNPQ

Sequences:

>Translated_120_residues
MSMNIPKIYNEKTGSDDAMNVTDNFREKLINAETPGFQAECDPNEADCAGVFVEDALSEEDALDTAIDLNDAQSGDVPVF
IEYGEGLDVPKNFTRVNAYELLGKRQGESVKDALERSNPQ
>Mature_119_residues
SMNIPKIYNEKTGSDDAMNVTDNFREKLINAETPGFQAECDPNEADCAGVFVEDALSEEDALDTAIDLNDAQSGDVPVFI
EYGEGLDVPKNFTRVNAYELLGKRQGESVKDALERSNPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To plasmid IncP-alpha RP4 traD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016703 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13178; Mature: 13047

Theoretical pI: Translated: 3.82; Mature: 3.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMNIPKIYNEKTGSDDAMNVTDNFREKLINAETPGFQAECDPNEADCAGVFVEDALSEE
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
DALDTAIDLNDAQSGDVPVFIEYGEGLDVPKNFTRVNAYELLGKRQGESVKDALERSNPQ
CCCHHEECCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SMNIPKIYNEKTGSDDAMNVTDNFREKLINAETPGFQAECDPNEADCAGVFVEDALSEE
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
DALDTAIDLNDAQSGDVPVFIEYGEGLDVPKNFTRVNAYELLGKRQGESVKDALERSNPQ
CCCHHEECCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]