| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
Click here to switch to the map view.
The map label for this gene is 28198554
Identifier: 28198554
GI number: 28198554
Start: 792255
End: 792830
Strand: Reverse
Name: 28198554
Synonym: PD0646
Alternate gene names: NA
Gene position: 792830-792255 (Counterclockwise)
Preceding gene: 28198557
Following gene: 28198550
Centisome position: 31.46
GC content: 47.92
Gene sequence:
>576_bases GTGACATCAGTCTCGTTCGATACACTCAAATTTGCAAATAAGCTTAAAACTGCCGCCATTCCACCTGCACACGCTGAGGC CGAAGCAGAAGCGTTAGAAGAGGTGCTGAAAACAAATCTACAAGAATCCAGAAACGGTAAGGCGTTAGCGCGTCTTGAAG CAAATATGGAGAAAGGATTCGCAGAGGTAGATCTACGTTTCGCACAGATAAATCAACGCTTCTCTGAAGTAAAAGGAATC GACGACGGCGACGCGGCGCTACACCATGCGGCGAAAGTGCTTGTGCTCACATCATTGATGCAATTTGCACTGCTCACGGG GGACTTTGAGTTCCACCTACAGGATGCCGCTAGCCTACAGGCTGCTGCACCATTGCCTGATAGCACGCGCTCCTCTTCAT GCAGCATCTTATTTTTTCCGAATGCAGGGTGGCATACGAGGCTGGAACAGGGCCTTTCCCAACACCTTAGCAAGCCCCCC AAAACCATCTTCAGTATGCACCTCATCAACCAAAATATAATTCAATCACTTAGATTGACATTGATAACAGCACCTTCGGA AACCGATTCCATATAA
Upstream 100 bases:
>100_bases CGGCGGAGCTTCATATCAGATACTCACATCACCTTGTCATCTACAGTAAGGCAGCACTGCTACACACTCGCGATCACATA TCGATAAGACAGGATAATTC
Downstream 100 bases:
>100_bases ATATTTGATTTAATTATTTTTTTCCAGAAAAGTACGGCACTCTACCCGGATCTGTTCCCCACTGCGGCGCCAATAATAGG TCACACAATGACGCTGGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 191; Mature: 190
Protein sequence:
>191_residues MTSVSFDTLKFANKLKTAAIPPAHAEAEAEALEEVLKTNLQESRNGKALARLEANMEKGFAEVDLRFAQINQRFSEVKGI DDGDAALHHAAKVLVLTSLMQFALLTGDFEFHLQDAASLQAAAPLPDSTRSSSCSILFFPNAGWHTRLEQGLSQHLSKPP KTIFSMHLINQNIIQSLRLTLITAPSETDSI
Sequences:
>Translated_191_residues MTSVSFDTLKFANKLKTAAIPPAHAEAEAEALEEVLKTNLQESRNGKALARLEANMEKGFAEVDLRFAQINQRFSEVKGI DDGDAALHHAAKVLVLTSLMQFALLTGDFEFHLQDAASLQAAAPLPDSTRSSSCSILFFPNAGWHTRLEQGLSQHLSKPP KTIFSMHLINQNIIQSLRLTLITAPSETDSI >Mature_190_residues TSVSFDTLKFANKLKTAAIPPAHAEAEAEALEEVLKTNLQESRNGKALARLEANMEKGFAEVDLRFAQINQRFSEVKGID DGDAALHHAAKVLVLTSLMQFALLTGDFEFHLQDAASLQAAAPLPDSTRSSSCSILFFPNAGWHTRLEQGLSQHLSKPPK TIFSMHLINQNIIQSLRLTLITAPSETDSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20897; Mature: 20766
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSVSFDTLKFANKLKTAAIPPAHAEAEAEALEEVLKTNLQESRNGKALARLEANMEKGF CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCH AEVDLRFAQINQRFSEVKGIDDGDAALHHAAKVLVLTSLMQFALLTGDFEFHLQDAASLQ HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHH AAAPLPDSTRSSSCSILFFPNAGWHTRLEQGLSQHLSKPPKTIFSMHLINQNIIQSLRLT HCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LITAPSETDSI HEECCCCCCCC >Mature Secondary Structure TSVSFDTLKFANKLKTAAIPPAHAEAEAEALEEVLKTNLQESRNGKALARLEANMEKGF CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCH AEVDLRFAQINQRFSEVKGIDDGDAALHHAAKVLVLTSLMQFALLTGDFEFHLQDAASLQ HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHH AAAPLPDSTRSSSCSILFFPNAGWHTRLEQGLSQHLSKPPKTIFSMHLINQNIIQSLRLT HCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LITAPSETDSI HEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA