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The map label for this gene is fimD [H]

Identifier: 28197997

GI number: 28197997

Start: 79042

End: 81555

Strand: Reverse

Name: fimD [H]

Synonym: PD0060

Alternate gene names: 28197997

Gene position: 81555-79042 (Counterclockwise)

Preceding gene: 28197998

Following gene: 77747625

Centisome position: 3.24

GC content: 52.63

Gene sequence:

>2514_bases
ATGATGTCAAGATTGGCTTGCGCGGAAACGGAGACTGATAATCTTGGACAACGCATGCTGGTGGCTAAAGCGGATAACAC
CGCGCCACAACGTGTAGCGCAAACGGCAAATTTCAACAATAGTTTTCTGGTTGGCCAAGCGCGTTCCGTTGACTTAGGAA
TGTTTTCCCGAGGCAATCCTGTTATTGCAGGTCTCTACCGTGCTGACCTTTATGTAAACGGCCAATGGAAAGGCCGGCGT
GATATGGAATTTCGTAATACTAAAGATGACAAGGAAGCTGTCACTTGCATGACGCTCGCCATGCTGGATGAACTCGGCAT
TGATACATCGGCGCTAACAGACTCAGCGGCTGACATGCAGGCCTGCAAAACCATAGACCAATGGCTGCCGGATGCCTATG
CACGTTTCGATGTAGCCACTCAGCGCTTGGACGTAAGCATCCCACAAGCCGCTATGCGACGCTCAGCACGTGGCTATGTG
AGCCCATCACTCTGGGATCATGGTGTCAATGCGGGATTCATCGGCTATGCCTTCAACTGGTATGGTGGCCGCAATGCAAA
TGCAATAAATAGCAGACGGCGTAGTGATTCAGCCTATCTTGGAATCAACAGCGGCTTGAATCTAGGCGATTGGCAATTTC
GCCATAATTCCAGTTACAGCTGGCATTCCAATGAAGGATCGCTGTGGCAGAACATTTCCACTTACGCACAACGCGCATTT
CCGAACACAAGTAGCATGCTGACAGTAGGCGACGCCTACACCAGCGGCGAATTATTTGATTCTATCGGTTTCCGTGGTAT
CAGCTTGGCAACCGATGACCGCATGTTGCCAGACTCGTTACGTGGCTATGCGCCTATCGTCCGTGGTATCGCGCAAAGTA
ATGCGCGTGTGGAGATACACCAGAACGGCCAGTTGATCTACAGCACCACGGTTGCGCCCGGGGCGTTCGTCATCGACGAT
CTATATCCCACCGGCTATGGAGGTGACTTACAGGTCACGGTCTATGAGACCGACGGCCGCCAACAGCAGTTCAGTGTCCC
CTATGGGTCTGTACCGCAAATGCTCCGAGCGGGGTCGCAGCGGTACAGCCTAACAGCCGGCAAGATTCGCAATAACAATC
TCAGTCATACCCCTTACTTGTTAGAGGGGACGTATCAACGCGGCATTAGCAACGCACTCACCGCTTATGCAGGCAGCACG
ATCAGTCAGCGGTACATCGCAGCGATAGCAGGGGCAGGTCTCTCTACCCCAGTTGGTGCATTTTCCTTGGACGGTACCGT
AGCACGCACAAAGCTACGTAACGACACATTTAGCGGTACGAGTCTACGCTTAAGCTACAGCAAGTTACTGAGCCCAACCA
ATACCAATATCACACTCGCTGCATATCGGTATTCGACATCAGGCTTTTATGGCTTGCAAGAGGCGATCATGGCGATGGAC
TACGAAAGGCGCGGCCTCAGCACAGCGTCAATTTATAGACAGCGCAGTCAGCTTCAACTCACTGTGAGCCAACAACTAGG
ACAGTATGGTTCACTGTACCTGACAGGATCAGCGCGGCAATACTGGAACCAACGCGGCAACACGATCCAGTACCAGGGAG
GCTACAACGTATCCTATAAGGGCGTGAGTTACGGCCTCTCAGCGTTACGCTCACAGATCCCAAGCATGCCCAGCGATACA
CAGATGCTATTCACAGTATCGGTTCCGCTAGGGAAAGCTTATCCGGTGATAGTCACTAGCCAAATCGGTTCACGCGATGG
ACGCTACGACAACAGCCGCGTAAGCCTAGTGGGAGCTAGCGGCAAAGACAGTGCATTAACGTATGGGATAGCCGCATCCG
ATGCGCGAAACAGCGCCACCATGATCGACGGCAATGTGCAATACCGTAGCCGCTATGCTGCGCTTTCAGGCAGCTATAGC
CATAACCGCAACTATAATCAGATGAGTCTTGGAGCCAGTGGTAGCATTGTCCTCCACAGCGGAGTTGCGACACTGGCTCC
GCAACGCGGTGACACAATGGTTATTATCGAAGCACCGGCAGCCAAGGGCGCCCGCGTATCCAATATATCCGGCGTGCGCA
TTGATAGCCGTGGCTATGCCGTCGTACCTTATGTCTCACCGTATCGAATGAACACGATCACCCTTGATCCCGAAGGGACA
GATCCTGATGTGGAACTGGAAACATCCAGCCAGCTTATCGCTCCCTATGCAGGTGCAATCTCCAAAGTGACTTTTGGAAC
ACGGAAGGGCCGCGCATTGATCGTTAATGCACGCACGCCGACTGGTAAAGCTTTGCCATTCGGTGCACAGGTTATTGATG
CCGAAGGACAATCCGTTGGCCTGGTGGCGCAGGGTAGCCTCATCTATATACGCGCAAAAGATCCCCAAGGCCGCCTGACC
ATTAAATGGGGGGATCAGGCGGCACAACAATGCCATTTGGAATATCAACTTCCTGCCAACGAAGCTTCGACTCGCCCAAG
CAGTTTCACAACTTTGGAAGCCATATGTCGATAA

Upstream 100 bases:

>100_bases
CCGTAAGCTGATGGCACCAGAGCTGGATTTAACACAAATCAGAGGGCGCTATTTCAAGCAACGCGTGTTGGTCGCTGCAA
TCGCTTCGACTTGCACACTA

Downstream 100 bases:

>100_bases
ACAACGGGGTCAGCGCTACTCACACCACGAGATACCAAAAACGGATTTGGAAAGTGGCGGCAGTATGTATGGGGATGCTG
CTAGTATCCAACGCCCAGGC

Product: outer membrane usher protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 837; Mature: 837

Protein sequence:

>837_residues
MMSRLACAETETDNLGQRMLVAKADNTAPQRVAQTANFNNSFLVGQARSVDLGMFSRGNPVIAGLYRADLYVNGQWKGRR
DMEFRNTKDDKEAVTCMTLAMLDELGIDTSALTDSAADMQACKTIDQWLPDAYARFDVATQRLDVSIPQAAMRRSARGYV
SPSLWDHGVNAGFIGYAFNWYGGRNANAINSRRRSDSAYLGINSGLNLGDWQFRHNSSYSWHSNEGSLWQNISTYAQRAF
PNTSSMLTVGDAYTSGELFDSIGFRGISLATDDRMLPDSLRGYAPIVRGIAQSNARVEIHQNGQLIYSTTVAPGAFVIDD
LYPTGYGGDLQVTVYETDGRQQQFSVPYGSVPQMLRAGSQRYSLTAGKIRNNNLSHTPYLLEGTYQRGISNALTAYAGST
ISQRYIAAIAGAGLSTPVGAFSLDGTVARTKLRNDTFSGTSLRLSYSKLLSPTNTNITLAAYRYSTSGFYGLQEAIMAMD
YERRGLSTASIYRQRSQLQLTVSQQLGQYGSLYLTGSARQYWNQRGNTIQYQGGYNVSYKGVSYGLSALRSQIPSMPSDT
QMLFTVSVPLGKAYPVIVTSQIGSRDGRYDNSRVSLVGASGKDSALTYGIAASDARNSATMIDGNVQYRSRYAALSGSYS
HNRNYNQMSLGASGSIVLHSGVATLAPQRGDTMVIIEAPAAKGARVSNISGVRIDSRGYAVVPYVSPYRMNTITLDPEGT
DPDVELETSSQLIAPYAGAISKVTFGTRKGRALIVNARTPTGKALPFGAQVIDAEGQSVGLVAQGSLIYIRAKDPQGRLT
IKWGDQAAQQCHLEYQLPANEASTRPSSFTTLEAICR

Sequences:

>Translated_837_residues
MMSRLACAETETDNLGQRMLVAKADNTAPQRVAQTANFNNSFLVGQARSVDLGMFSRGNPVIAGLYRADLYVNGQWKGRR
DMEFRNTKDDKEAVTCMTLAMLDELGIDTSALTDSAADMQACKTIDQWLPDAYARFDVATQRLDVSIPQAAMRRSARGYV
SPSLWDHGVNAGFIGYAFNWYGGRNANAINSRRRSDSAYLGINSGLNLGDWQFRHNSSYSWHSNEGSLWQNISTYAQRAF
PNTSSMLTVGDAYTSGELFDSIGFRGISLATDDRMLPDSLRGYAPIVRGIAQSNARVEIHQNGQLIYSTTVAPGAFVIDD
LYPTGYGGDLQVTVYETDGRQQQFSVPYGSVPQMLRAGSQRYSLTAGKIRNNNLSHTPYLLEGTYQRGISNALTAYAGST
ISQRYIAAIAGAGLSTPVGAFSLDGTVARTKLRNDTFSGTSLRLSYSKLLSPTNTNITLAAYRYSTSGFYGLQEAIMAMD
YERRGLSTASIYRQRSQLQLTVSQQLGQYGSLYLTGSARQYWNQRGNTIQYQGGYNVSYKGVSYGLSALRSQIPSMPSDT
QMLFTVSVPLGKAYPVIVTSQIGSRDGRYDNSRVSLVGASGKDSALTYGIAASDARNSATMIDGNVQYRSRYAALSGSYS
HNRNYNQMSLGASGSIVLHSGVATLAPQRGDTMVIIEAPAAKGARVSNISGVRIDSRGYAVVPYVSPYRMNTITLDPEGT
DPDVELETSSQLIAPYAGAISKVTFGTRKGRALIVNARTPTGKALPFGAQVIDAEGQSVGLVAQGSLIYIRAKDPQGRLT
IKWGDQAAQQCHLEYQLPANEASTRPSSFTTLEAICR
>Mature_837_residues
MMSRLACAETETDNLGQRMLVAKADNTAPQRVAQTANFNNSFLVGQARSVDLGMFSRGNPVIAGLYRADLYVNGQWKGRR
DMEFRNTKDDKEAVTCMTLAMLDELGIDTSALTDSAADMQACKTIDQWLPDAYARFDVATQRLDVSIPQAAMRRSARGYV
SPSLWDHGVNAGFIGYAFNWYGGRNANAINSRRRSDSAYLGINSGLNLGDWQFRHNSSYSWHSNEGSLWQNISTYAQRAF
PNTSSMLTVGDAYTSGELFDSIGFRGISLATDDRMLPDSLRGYAPIVRGIAQSNARVEIHQNGQLIYSTTVAPGAFVIDD
LYPTGYGGDLQVTVYETDGRQQQFSVPYGSVPQMLRAGSQRYSLTAGKIRNNNLSHTPYLLEGTYQRGISNALTAYAGST
ISQRYIAAIAGAGLSTPVGAFSLDGTVARTKLRNDTFSGTSLRLSYSKLLSPTNTNITLAAYRYSTSGFYGLQEAIMAMD
YERRGLSTASIYRQRSQLQLTVSQQLGQYGSLYLTGSARQYWNQRGNTIQYQGGYNVSYKGVSYGLSALRSQIPSMPSDT
QMLFTVSVPLGKAYPVIVTSQIGSRDGRYDNSRVSLVGASGKDSALTYGIAASDARNSATMIDGNVQYRSRYAALSGSYS
HNRNYNQMSLGASGSIVLHSGVATLAPQRGDTMVIIEAPAAKGARVSNISGVRIDSRGYAVVPYVSPYRMNTITLDPEGT
DPDVELETSSQLIAPYAGAISKVTFGTRKGRALIVNARTPTGKALPFGAQVIDAEGQSVGLVAQGSLIYIRAKDPQGRLT
IKWGDQAAQQCHLEYQLPANEASTRPSSFTTLEAICR

Specific function: Involved in the export and assembly of the type 3 fimbrial subunit (mrkA) [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=842, Percent_Identity=36.5795724465558, Blast_Score=498, Evalue=1e-142,
Organism=Escherichia coli, GI1786332, Length=828, Percent_Identity=35.7487922705314, Blast_Score=497, Evalue=1e-141,
Organism=Escherichia coli, GI1787172, Length=825, Percent_Identity=36.1212121212121, Blast_Score=476, Evalue=1e-135,
Organism=Escherichia coli, GI1786744, Length=843, Percent_Identity=34.638196915777, Blast_Score=467, Evalue=1e-132,
Organism=Escherichia coli, GI1789533, Length=789, Percent_Identity=34.4740177439797, Blast_Score=427, Evalue=1e-120,
Organism=Escherichia coli, GI1788427, Length=811, Percent_Identity=30.7028360049322, Blast_Score=395, Evalue=1e-111,
Organism=Escherichia coli, GI87081778, Length=828, Percent_Identity=27.2946859903382, Blast_Score=220, Evalue=3e-58,
Organism=Escherichia coli, GI1789610, Length=794, Percent_Identity=23.2997481108312, Blast_Score=146, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 90901; Mature: 90901

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSRLACAETETDNLGQRMLVAKADNTAPQRVAQTANFNNSFLVGQARSVDLGMFSRGNP
CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCEEEECCCEEEEEEECCCCC
VIAGLYRADLYVNGQWKGRRDMEFRNTKDDKEAVTCMTLAMLDELGIDTSALTDSAADMQ
EEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHH
ACKTIDQWLPDAYARFDVATQRLDVSIPQAAMRRSARGYVSPSLWDHGVNAGFIGYAFNW
HHHHHHHHCCHHHHHHHHHHHEEECCCCHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEEE
YGGRNANAINSRRRSDSAYLGINSGLNLGDWQFRHNSSYSWHSNEGSLWQNISTYAQRAF
CCCCCCCHHHHCCCCCCEEEEECCCCCCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHC
PNTSSMLTVGDAYTSGELFDSIGFRGISLATDDRMLPDSLRGYAPIVRGIAQSNARVEIH
CCCCCEEEECCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
QNGQLIYSTTVAPGAFVIDDLYPTGYGGDLQVTVYETDGRQQQFSVPYGSVPQMLRAGSQ
CCCEEEEEEECCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEECCCCCCHHHHHHCCCC
RYSLTAGKIRNNNLSHTPYLLEGTYQRGISNALTAYAGSTISQRYIAAIAGAGLSTPVGA
EEEEEECEEECCCCCCCCEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
FSLDGTVARTKLRNDTFSGTSLRLSYSKLLSPTNTNITLAAYRYSTSGFYGLQEAIMAMD
EECCCHHEEEEECCCCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHH
YERRGLSTASIYRQRSQLQLTVSQQLGQYGSLYLTGSARQYWNQRGNTIQYQGGYNVSYK
HHHCCCCHHHHHHHHHHEEEEEHHHCCCCCCEEEECCHHHHHHCCCCEEEECCCCEEEEC
GVSYGLSALRSQIPSMPSDTQMLFTVSVPLGKAYPVIVTSQIGSRDGRYDNSRVSLVGAS
HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECC
GKDSALTYGIAASDARNSATMIDGNVQYRSRYAALSGSYSHNRNYNQMSLGASGSIVLHS
CCCCEEEEEEEECCCCCCEEEEECCCHHHEEEEEECCCCCCCCCCCEEECCCCCCEEEEC
GVATLAPQRGDTMVIIEAPAAKGARVSNISGVRIDSRGYAVVPYVSPYRMNTITLDPEGT
CHHHCCCCCCCEEEEEECCCCCCCEECCCCCEEECCCCCEEEEECCCEEEEEEEECCCCC
DPDVELETSSQLIAPYAGAISKVTFGTRKGRALIVNARTPTGKALPFGAQVIDAEGQSVG
CCCEEEECCCCEECHHHCHHHEEEECCCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEE
LVAQGSLIYIRAKDPQGRLTIKWGDQAAQQCHLEYQLPANEASTRPSSFTTLEAICR
EEECCCEEEEEECCCCCEEEEEECCHHHHHEEEEEECCCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure
MMSRLACAETETDNLGQRMLVAKADNTAPQRVAQTANFNNSFLVGQARSVDLGMFSRGNP
CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCEEEECCCEEEEEEECCCCC
VIAGLYRADLYVNGQWKGRRDMEFRNTKDDKEAVTCMTLAMLDELGIDTSALTDSAADMQ
EEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHH
ACKTIDQWLPDAYARFDVATQRLDVSIPQAAMRRSARGYVSPSLWDHGVNAGFIGYAFNW
HHHHHHHHCCHHHHHHHHHHHEEECCCCHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEEE
YGGRNANAINSRRRSDSAYLGINSGLNLGDWQFRHNSSYSWHSNEGSLWQNISTYAQRAF
CCCCCCCHHHHCCCCCCEEEEECCCCCCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHC
PNTSSMLTVGDAYTSGELFDSIGFRGISLATDDRMLPDSLRGYAPIVRGIAQSNARVEIH
CCCCCEEEECCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
QNGQLIYSTTVAPGAFVIDDLYPTGYGGDLQVTVYETDGRQQQFSVPYGSVPQMLRAGSQ
CCCEEEEEEECCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEECCCCCCHHHHHHCCCC
RYSLTAGKIRNNNLSHTPYLLEGTYQRGISNALTAYAGSTISQRYIAAIAGAGLSTPVGA
EEEEEECEEECCCCCCCCEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
FSLDGTVARTKLRNDTFSGTSLRLSYSKLLSPTNTNITLAAYRYSTSGFYGLQEAIMAMD
EECCCHHEEEEECCCCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHH
YERRGLSTASIYRQRSQLQLTVSQQLGQYGSLYLTGSARQYWNQRGNTIQYQGGYNVSYK
HHHCCCCHHHHHHHHHHEEEEEHHHCCCCCCEEEECCHHHHHHCCCCEEEECCCCEEEEC
GVSYGLSALRSQIPSMPSDTQMLFTVSVPLGKAYPVIVTSQIGSRDGRYDNSRVSLVGAS
HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECC
GKDSALTYGIAASDARNSATMIDGNVQYRSRYAALSGSYSHNRNYNQMSLGASGSIVLHS
CCCCEEEEEEEECCCCCCEEEEECCCHHHEEEEEECCCCCCCCCCCEEECCCCCCEEEEC
GVATLAPQRGDTMVIIEAPAAKGARVSNISGVRIDSRGYAVVPYVSPYRMNTITLDPEGT
CHHHCCCCCCCEEEEEECCCCCCCEECCCCCEEECCCCCEEEEECCCEEEEEEEECCCCC
DPDVELETSSQLIAPYAGAISKVTFGTRKGRALIVNARTPTGKALPFGAQVIDAEGQSVG
CCCEEEECCCCEECHHHCHHHEEEECCCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEE
LVAQGSLIYIRAKDPQGRLTIKWGDQAAQQCHLEYQLPANEASTRPSSFTTLEAICR
EEECCCEEEEEECCCCCEEEEEECCHHHHHEEEEEECCCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1670938 [H]