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The map label for this gene is mrkD [H]

Identifier: 77747625

GI number: 77747625

Start: 76380

End: 77360

Strand: Reverse

Name: mrkD [H]

Synonym: PD0058

Alternate gene names: 77747625

Gene position: 77360-76380 (Counterclockwise)

Preceding gene: 28197997

Following gene: 28197992

Centisome position: 3.07

GC content: 49.75

Gene sequence:

>981_bases
ATGCTAATCGCACCTCACGTTCAGGCAACTTGCACCATCAAGGAAGGCATAGTCGCGCAAAACATCGACTTTGGTGCAGG
CCGCATTCTGATCCAACCCTCACTGGCTATCGGTGATCGTATTGCTCTGTTAACCCATAATATTAATCGCGTCGACAGAT
ATGGAACATGTGTCAATAACGGGATCATGTACGGCGCTTTCACTCGTTCAATGACCCCCGTCAGCGGCATGAAGAATGTT
TATGCGACCGATGTTGCAGGCGTAGGAATCAGACTCTACCGGGAAGCGGGCAAAGTATCCAATTTCTACCCTCACACATT
GAATTCTAATAATCCCCCCGGTAGAGTCACTAATCTCAGCCTCAACGAAGGATATTTCCAAGTTGAACTGATCAAGACCG
CCACCACCACCGGCTCAGGGCCAATTGCAAGCGCTGGGCCATTCACTACTTACTATGCGGATGGCAGTGGCATCAGTCGC
CCGATACTAACATCCTCACTCAGTGGGATCGGTATTACCATTGTTACCTCAACATGTCAGGTCGATGCTGGATCAAAGAA
CATCGCTGTCAATTTCGGCTCGGTATCCAGTAACACCTTTAAAGGACTCGGCTCCAAAGGGCCCGAGCGTGACTTTACTA
TCAATTTGATATGCCATGGAGGCAATGTGACCGAAGCCGATCAGGCACAAATATCTGTGCGTATTGATGGCACACAGGAT
AGCTCCGGGCAATCTGGGGTACTTGCCATCACTTCAGCCAGCGACGCAGCCAGCAATATAGGCATTGAATTAGTAGACCT
CCTAACTGGAAGTGAACGTCAGGTGGTGTTTGGGCAAGCTATCACACTAGGCCGGACCGCTATCAACGCTAGCAGTACAT
TGAGCCTGCCAATGCGGGCCAGATATATCCAAACGCAAACAGGAAAAGTAGGCCCAGGTGCAGCAAAAGGAACGGCAACC
TTCACGATTGAATACCAGTAA

Upstream 100 bases:

>100_bases
CAACTTTGGAAACCATATGTCGATAGTCAACACGATTAGTGTCGCGCACATCTCTACATACCAGCAACGGACTTTAAAAA
TAATAGCAGCGTGCCTAACG

Downstream 100 bases:

>100_bases
CAAAGCGCATTCAAAGCGTTTTCAAAATTTACAAGATGATCAAAAAACGAATGTCAAAATACACATTAAGCTGTAAAGAA
AATCGCCAAGCAAACCAATT

Product: fimbrial adhesin precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MLIAPHVQATCTIKEGIVAQNIDFGAGRILIQPSLAIGDRIALLTHNINRVDRYGTCVNNGIMYGAFTRSMTPVSGMKNV
YATDVAGVGIRLYREAGKVSNFYPHTLNSNNPPGRVTNLSLNEGYFQVELIKTATTTGSGPIASAGPFTTYYADGSGISR
PILTSSLSGIGITIVTSTCQVDAGSKNIAVNFGSVSSNTFKGLGSKGPERDFTINLICHGGNVTEADQAQISVRIDGTQD
SSGQSGVLAITSASDAASNIGIELVDLLTGSERQVVFGQAITLGRTAINASSTLSLPMRARYIQTQTGKVGPGAAKGTAT
FTIEYQ

Sequences:

>Translated_326_residues
MLIAPHVQATCTIKEGIVAQNIDFGAGRILIQPSLAIGDRIALLTHNINRVDRYGTCVNNGIMYGAFTRSMTPVSGMKNV
YATDVAGVGIRLYREAGKVSNFYPHTLNSNNPPGRVTNLSLNEGYFQVELIKTATTTGSGPIASAGPFTTYYADGSGISR
PILTSSLSGIGITIVTSTCQVDAGSKNIAVNFGSVSSNTFKGLGSKGPERDFTINLICHGGNVTEADQAQISVRIDGTQD
SSGQSGVLAITSASDAASNIGIELVDLLTGSERQVVFGQAITLGRTAINASSTLSLPMRARYIQTQTGKVGPGAAKGTAT
FTIEYQ
>Mature_326_residues
MLIAPHVQATCTIKEGIVAQNIDFGAGRILIQPSLAIGDRIALLTHNINRVDRYGTCVNNGIMYGAFTRSMTPVSGMKNV
YATDVAGVGIRLYREAGKVSNFYPHTLNSNNPPGRVTNLSLNEGYFQVELIKTATTTGSGPIASAGPFTTYYADGSGISR
PILTSSLSGIGITIVTSTCQVDAGSKNIAVNFGSVSSNTFKGLGSKGPERDFTINLICHGGNVTEADQAQISVRIDGTQD
SSGQSGVLAITSASDAASNIGIELVDLLTGSERQVVFGQAITLGRTAINASSTLSLPMRARYIQTQTGKVGPGAAKGTAT
FTIEYQ

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 34036; Mature: 34036

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAPHVQATCTIKEGIVAQNIDFGAGRILIQPSLAIGDRIALLTHNINRVDRYGTCVNN
CEECCCCEEEEEEECCEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHCCCHHC
GIMYGAFTRSMTPVSGMKNVYATDVAGVGIRLYREAGKVSNFYPHTLNSNNPPGRVTNLS
CEEEEEEECCCCCCHHCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
LNEGYFQVELIKTATTTGSGPIASAGPFTTYYADGSGISRPILTSSLSGIGITIVTSTCQ
ECCCEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCEEEEEEEEEE
VDAGSKNIAVNFGSVSSNTFKGLGSKGPERDFTINLICHGGNVTEADQAQISVRIDGTQD
ECCCCCEEEEEECCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCC
SSGQSGVLAITSASDAASNIGIELVDLLTGSERQVVFGQAITLGRTAINASSTLSLPMRA
CCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCEEECCCCEEECCEEE
RYIQTQTGKVGPGAAKGTATFTIEYQ
EEEEECCCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MLIAPHVQATCTIKEGIVAQNIDFGAGRILIQPSLAIGDRIALLTHNINRVDRYGTCVNN
CEECCCCEEEEEEECCEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHCCCHHC
GIMYGAFTRSMTPVSGMKNVYATDVAGVGIRLYREAGKVSNFYPHTLNSNNPPGRVTNLS
CEEEEEEECCCCCCHHCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
LNEGYFQVELIKTATTTGSGPIASAGPFTTYYADGSGISRPILTSSLSGIGITIVTSTCQ
ECCCEEEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCEEEEEEEEEE
VDAGSKNIAVNFGSVSSNTFKGLGSKGPERDFTINLICHGGNVTEADQAQISVRIDGTQD
ECCCCCEEEEEECCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCC
SSGQSGVLAITSASDAASNIGIELVDLLTGSERQVVFGQAITLGRTAINASSTLSLPMRA
CCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCEEECCCCEEECCEEE
RYIQTQTGKVGPGAAKGTATFTIEYQ
EEEEECCCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1670938; 2563996 [H]