| Definition | Chlamydophila abortus S26/3, complete genome. |
|---|---|
| Accession | NC_004552 |
| Length | 1,144,377 |
Click here to switch to the map view.
The map label for this gene is 62184904
Identifier: 62184904
GI number: 62184904
Start: 289494
End: 291275
Strand: Direct
Name: 62184904
Synonym: CAB263
Alternate gene names: NA
Gene position: 289494-291275 (Clockwise)
Preceding gene: 62184903
Following gene: 62184905
Centisome position: 25.3
GC content: 43.55
Gene sequence:
>1782_bases ATGTCGATTTCTAGGATTCCAGGCGATGATCACAAAAGTTTGGAGATTTTAGGGGCCAGAGGTCTCTCTCAAATATCTCA GGATAAACAGGTAAGAGCACCTTTACATGATGCTGTGCCTGCTAATGAAGTCGATCAAGATAAAAGGAGTTTTTCTCATT CTGTAGGGTTATTAGCGGGATTGATGGTCTTTGCGTTAGCTATGGTGGTGGTGGTTGTTGCTTTAACTTGCCTGGCGCCT GGAGTGCCTCAGAGTATTGTCTTGGCCATCGCTTTAGGAGGCGTTTCTCTTGGGGGTTTTTCTGTCATGAAAAACATCGT CAATAAGGTTCGTGATCTTTTTGCTCCGACAATGTCCGAAAAACAAAGGATAAAAAGTGCTGCAGGTATAGGAATCGGAT TTATCGGATTAGGCTTAGCTATGAAGGTAGGCGCTCATTTTATTCCCGGAGGTTACGGTGGCGTTGTCGGGAATTTAGGT GGAGCGGCTTATTCTAAGGGTAGCCAATCCGGTTTTACAAGCCTAGCACATTATCTATACATCAAATTTGCACGTTCTGA AAAGGCGGCGTCCGGAGAGCCTTTAACACGTATAGAAATTATGCAAGAGGCTAAGAAGTTACATCGGATCAGTCTGAGTC TTTTAGTCGTAGGTGTGGGCTTTGCAGCCTTAGGGATTACTCTTGCTATTGTCGGTACGGTAGTTTTAGGCGGGGTGCCT GCCACAGCCATGCTTGTGCTTGCTCCTCCTTTCATTTCCATGGGGATAGGATTAGTTTTACAAACGTTACTGCACAGTAG TATCGGAAAGTGGAAGAGTTTTTTAGACTCTCAAAAAAATCAAGCTCTTTTCCTTGATACAGGGTTGAAGAATATTCGTG ATGAAGATCTTAGAGCTCACGAGATTGCCAAAGAGCCGTTAAACAAAATCATCAAGAAAGAGATAGACATAGAAGAGGAA ACCTCGACTTTCGTAAAAACTGAAAAGGTTGTAGAGGATCAGAGAATTACTGCTGAGGAAATAGATAAACGTTTATCGTT AACTCCCGGGCAAAAAGTGATTTTTGCTCTCTCTGTTTTGCTTGTGCTTGCGGGGTTAGCCGCTGTTGTTACTGCAGGAT TTGTCGGCATGCCAGCATTACAAGTCCTCCTTGTGGCGACTACAGGATCTTCGGTAGCTTCCACCGTTTTGCCCATGGCC TCTTCGGGTTTGGTGTATAATGTATTTCAATGCAAGACCCGATTACGTATTGCTAAAGCCCGTTGGAAAGAAGCCAAAGC AAAATCTCAATTTAAAAAACAGCTCATTGGGGGAGCAGGTTTTTCTAAAACAGAGCTGAATAAAGCTTGGGTACATGTGG GAAAAGATACCATCCTGGAGACAGACCGTGCTATCCGTGAAGAAATCGCGAATTTTGAGAAAGGCCGCGGGGTAAACAGT GTGATCGTGGCTGGGATTTTTGTCGTTACTGGGGTGGGAATTATGCTTCTGACTCTTATTCCTACTTTAGCTCCGATTAT GGCTGGAGTCTTGGCTATAGGATCGACGTTGATGATCATAGGAGCCGCTATGTATTTACAGAAGTTTACAGCGTGGCTGT ATAATCGTCTGGTCATGTTAAGAGAGCGTTTATACTCACGCAGAAACTATTTAAGCGATATCTCCAGAAAAATAGACATT TCTACAGAAGATCTTATCGTTGATGCGAATTTAGATGATTTGGATGCGGTTATAGATCTGGATGGGGATGACGATGTCTT TGCCGATGCTTTTGATACTTAG
Upstream 100 bases:
>100_bases TATTTTTGTTGTGGTTTATTTGTGAAATTGACCAGTGTTTGATATCTAGATTTGTGATTATAATTAATTAATAGTGAATT TTATTTTTATTTTTTAATTT
Downstream 100 bases:
>100_bases AGGCTTATCTAAAATAGAGTTGCCGTATCATCTCCATCGAGTTTCTCTTTATCTAATTACACTATAATTATCCTTCCTAT TCTCTTTACAAGAAAAATTT
Product: putative inner membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 593; Mature: 592
Protein sequence:
>593_residues MSISRIPGDDHKSLEILGARGLSQISQDKQVRAPLHDAVPANEVDQDKRSFSHSVGLLAGLMVFALAMVVVVVALTCLAP GVPQSIVLAIALGGVSLGGFSVMKNIVNKVRDLFAPTMSEKQRIKSAAGIGIGFIGLGLAMKVGAHFIPGGYGGVVGNLG GAAYSKGSQSGFTSLAHYLYIKFARSEKAASGEPLTRIEIMQEAKKLHRISLSLLVVGVGFAALGITLAIVGTVVLGGVP ATAMLVLAPPFISMGIGLVLQTLLHSSIGKWKSFLDSQKNQALFLDTGLKNIRDEDLRAHEIAKEPLNKIIKKEIDIEEE TSTFVKTEKVVEDQRITAEEIDKRLSLTPGQKVIFALSVLLVLAGLAAVVTAGFVGMPALQVLLVATTGSSVASTVLPMA SSGLVYNVFQCKTRLRIAKARWKEAKAKSQFKKQLIGGAGFSKTELNKAWVHVGKDTILETDRAIREEIANFEKGRGVNS VIVAGIFVVTGVGIMLLTLIPTLAPIMAGVLAIGSTLMIIGAAMYLQKFTAWLYNRLVMLRERLYSRRNYLSDISRKIDI STEDLIVDANLDDLDAVIDLDGDDDVFADAFDT
Sequences:
>Translated_593_residues MSISRIPGDDHKSLEILGARGLSQISQDKQVRAPLHDAVPANEVDQDKRSFSHSVGLLAGLMVFALAMVVVVVALTCLAP GVPQSIVLAIALGGVSLGGFSVMKNIVNKVRDLFAPTMSEKQRIKSAAGIGIGFIGLGLAMKVGAHFIPGGYGGVVGNLG GAAYSKGSQSGFTSLAHYLYIKFARSEKAASGEPLTRIEIMQEAKKLHRISLSLLVVGVGFAALGITLAIVGTVVLGGVP ATAMLVLAPPFISMGIGLVLQTLLHSSIGKWKSFLDSQKNQALFLDTGLKNIRDEDLRAHEIAKEPLNKIIKKEIDIEEE TSTFVKTEKVVEDQRITAEEIDKRLSLTPGQKVIFALSVLLVLAGLAAVVTAGFVGMPALQVLLVATTGSSVASTVLPMA SSGLVYNVFQCKTRLRIAKARWKEAKAKSQFKKQLIGGAGFSKTELNKAWVHVGKDTILETDRAIREEIANFEKGRGVNS VIVAGIFVVTGVGIMLLTLIPTLAPIMAGVLAIGSTLMIIGAAMYLQKFTAWLYNRLVMLRERLYSRRNYLSDISRKIDI STEDLIVDANLDDLDAVIDLDGDDDVFADAFDT >Mature_592_residues SISRIPGDDHKSLEILGARGLSQISQDKQVRAPLHDAVPANEVDQDKRSFSHSVGLLAGLMVFALAMVVVVVALTCLAPG VPQSIVLAIALGGVSLGGFSVMKNIVNKVRDLFAPTMSEKQRIKSAAGIGIGFIGLGLAMKVGAHFIPGGYGGVVGNLGG AAYSKGSQSGFTSLAHYLYIKFARSEKAASGEPLTRIEIMQEAKKLHRISLSLLVVGVGFAALGITLAIVGTVVLGGVPA TAMLVLAPPFISMGIGLVLQTLLHSSIGKWKSFLDSQKNQALFLDTGLKNIRDEDLRAHEIAKEPLNKIIKKEIDIEEET STFVKTEKVVEDQRITAEEIDKRLSLTPGQKVIFALSVLLVLAGLAAVVTAGFVGMPALQVLLVATTGSSVASTVLPMAS SGLVYNVFQCKTRLRIAKARWKEAKAKSQFKKQLIGGAGFSKTELNKAWVHVGKDTILETDRAIREEIANFEKGRGVNSV IVAGIFVVTGVGIMLLTLIPTLAPIMAGVLAIGSTLMIIGAAMYLQKFTAWLYNRLVMLRERLYSRRNYLSDISRKIDIS TEDLIVDANLDDLDAVIDLDGDDDVFADAFDT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63377; Mature: 63246
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISRIPGDDHKSLEILGARGLSQISQDKQVRAPLHDAVPANEVDQDKRSFSHSVGLLAG CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHH LMVFALAMVVVVVALTCLAPGVPQSIVLAIALGGVSLGGFSVMKNIVNKVRDLFAPTMSE HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHH KQRIKSAAGIGIGFIGLGLAMKVGAHFIPGGYGGVVGNLGGAAYSKGSQSGFTSLAHYLY HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHCCCCCCHHHHHHHHHHH IKFARSEKAASGEPLTRIEIMQEAKKLHRISLSLLVVGVGFAALGITLAIVGTVVLGGVP HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ATAMLVLAPPFISMGIGLVLQTLLHSSIGKWKSFLDSQKNQALFLDTGLKNIRDEDLRAH HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCHHHHHHH EIAKEPLNKIIKKEIDIEEETSTFVKTEKVVEDQRITAEEIDKRLSLTPGQKVIFALSVL HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHH LVLAGLAAVVTAGFVGMPALQVLLVATTGSSVASTVLPMASSGLVYNVFQCKTRLRIAKA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHH RWKEAKAKSQFKKQLIGGAGFSKTELNKAWVHVGKDTILETDRAIREEIANFEKGRGVNS HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHH VIVAGIFVVTGVGIMLLTLIPTLAPIMAGVLAIGSTLMIIGAAMYLQKFTAWLYNRLVML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RERLYSRRNYLSDISRKIDISTEDLIVDANLDDLDAVIDLDGDDDVFADAFDT HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCC >Mature Secondary Structure SISRIPGDDHKSLEILGARGLSQISQDKQVRAPLHDAVPANEVDQDKRSFSHSVGLLAG CCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHH LMVFALAMVVVVVALTCLAPGVPQSIVLAIALGGVSLGGFSVMKNIVNKVRDLFAPTMSE HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHH KQRIKSAAGIGIGFIGLGLAMKVGAHFIPGGYGGVVGNLGGAAYSKGSQSGFTSLAHYLY HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHCCCCCCHHHHHHHHHHH IKFARSEKAASGEPLTRIEIMQEAKKLHRISLSLLVVGVGFAALGITLAIVGTVVLGGVP HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ATAMLVLAPPFISMGIGLVLQTLLHSSIGKWKSFLDSQKNQALFLDTGLKNIRDEDLRAH HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCHHHHHHH EIAKEPLNKIIKKEIDIEEETSTFVKTEKVVEDQRITAEEIDKRLSLTPGQKVIFALSVL HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHH LVLAGLAAVVTAGFVGMPALQVLLVATTGSSVASTVLPMASSGLVYNVFQCKTRLRIAKA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHH RWKEAKAKSQFKKQLIGGAGFSKTELNKAWVHVGKDTILETDRAIREEIANFEKGRGVNS HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHH VIVAGIFVVTGVGIMLLTLIPTLAPIMAGVLAIGSTLMIIGAAMYLQKFTAWLYNRLVML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RERLYSRRNYLSDISRKIDISTEDLIVDANLDDLDAVIDLDGDDDVFADAFDT HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA