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The map label for this gene is rlmI [H]

Identifier: 62184853

GI number: 62184853

Start: 230341

End: 231165

Strand: Direct

Name: rlmI [H]

Synonym: CAB209

Alternate gene names: 62184853

Gene position: 230341-231165 (Clockwise)

Preceding gene: 62184852

Following gene: 62184854

Centisome position: 20.13

GC content: 42.42

Gene sequence:

>825_bases
ATGACTTATAAGTTACTCGATAGCGGTGAAGGGAAAAAGTTAGAAAGCTTTGGCCCCATAACTCTTATCCGCCCCTCTTG
TACGGCAATTTGGCCGAAGACAACACCGTCTTTATGGAAAAAGGCTCATGCGGAATATGTGCGATCTGGAGAGGAGGGAC
AATGGCGTTGTGCAGTCTCTATTCCTGAAAGTTGGCGCATCAACCTGGACATTGTGGATTGCACGCTAAAGCTCACCTCT
TTCGGTCATATAGGGATTTTTCCAGAGCATAGCGGATTTTGGCCAGAATTGCAATTGAGCATAGAACGGCATTCGGCATA
CCGGGTGTTAAATTTATTTGCCCATACTGGTTCCACATCGATATTTGCTGCAAAGTGCGGAGCCAAGGTTTGTCACGTAG
ATGCTTCGAAACCCGCGATAAAGTGGGCGCAAAAGAATGTGGAAAATAATGCTTTGCCCGAGAAAAGGATATTTTGGGTT
GTTGAAGATGTGTTTTCTTTTTTGCAAAAAGAAATACGTAAAGGGAAAAAGTACGATATCATCCTACTTGATCCTCCAAC
CTATGCTCGTGGACCTAATGGAGAGATTTTCAAAATAGATAAGGATTTCTTTTCCTTATTAGTTTTGTGCTCAAAATTAC
TTTCAGATTGTTCTTCTTATGTTTTGATCACGTCGCATACTCCCGGTCATACGCCTGCTTTTTTGCAGAGTTTAGCTATG
CGTGCCTTTGCTTTAGATAAACAGTTTTGGTCCTCAGGAGAAAGTTTTTGTGGCTTAGGAGATCAAGCTCTACCCTCAGG
AGTGTTTGCTAAATGGAGTTTATAG

Upstream 100 bases:

>100_bases
TAAACGAGAAGGATCCAAAGTAAATATAGAGCCGGATATGGCGACCAAAACACAAGTGGATACGTTAAGGCGTCTCTATC
TTCGATAAACAAACAAATAT

Downstream 100 bases:

>100_bases
GAAAAAATAACCCTAAGGTAAAAGAAGCTGTCGCGTTAAAACATAACCGCTCTCGTAAAGGCCCGGTCTTTCTTTTAGAG
GGGTTTCGAGAGATTCAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: 23S rRNA m5C1962 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase RlmI [H]

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MTYKLLDSGEGKKLESFGPITLIRPSCTAIWPKTTPSLWKKAHAEYVRSGEEGQWRCAVSIPESWRINLDIVDCTLKLTS
FGHIGIFPEHSGFWPELQLSIERHSAYRVLNLFAHTGSTSIFAAKCGAKVCHVDASKPAIKWAQKNVENNALPEKRIFWV
VEDVFSFLQKEIRKGKKYDIILLDPPTYARGPNGEIFKIDKDFFSLLVLCSKLLSDCSSYVLITSHTPGHTPAFLQSLAM
RAFALDKQFWSSGESFCGLGDQALPSGVFAKWSL

Sequences:

>Translated_274_residues
MTYKLLDSGEGKKLESFGPITLIRPSCTAIWPKTTPSLWKKAHAEYVRSGEEGQWRCAVSIPESWRINLDIVDCTLKLTS
FGHIGIFPEHSGFWPELQLSIERHSAYRVLNLFAHTGSTSIFAAKCGAKVCHVDASKPAIKWAQKNVENNALPEKRIFWV
VEDVFSFLQKEIRKGKKYDIILLDPPTYARGPNGEIFKIDKDFFSLLVLCSKLLSDCSSYVLITSHTPGHTPAFLQSLAM
RAFALDKQFWSSGESFCGLGDQALPSGVFAKWSL
>Mature_273_residues
TYKLLDSGEGKKLESFGPITLIRPSCTAIWPKTTPSLWKKAHAEYVRSGEEGQWRCAVSIPESWRINLDIVDCTLKLTSF
GHIGIFPEHSGFWPELQLSIERHSAYRVLNLFAHTGSTSIFAAKCGAKVCHVDASKPAIKWAQKNVENNALPEKRIFWVV
EDVFSFLQKEIRKGKKYDIILLDPPTYARGPNGEIFKIDKDFFSLLVLCSKLLSDCSSYVLITSHTPGHTPAFLQSLAMR
AFALDKQFWSSGESFCGLGDQALPSGVFAKWSL

Specific function: Specifically methylates the cytosine at position 1962 (m5C1962) of 23S rRNA [H]

COG id: COG1092

COG function: function code R; Predicted SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR019614 [H]

Pfam domain/function: PF10672 Methyltrans_SAM [H]

EC number: =2.1.1.191 [H]

Molecular weight: Translated: 30706; Mature: 30574

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYKLLDSGEGKKLESFGPITLIRPSCTAIWPKTTPSLWKKAHAEYVRSGEEGQWRCAVS
CEEEEECCCCCCEECCCCCEEEECCCCCEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
IPESWRINLDIVDCTLKLTSFGHIGIFPEHSGFWPELQLSIERHSAYRVLNLFAHTGSTS
CCCCEEEEEEEEEEEEEEECCCEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCE
IFAAKCGAKVCHVDASKPAIKWAQKNVENNALPEKRIFWVVEDVFSFLQKEIRKGKKYDI
EEEECCCCEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
ILLDPPTYARGPNGEIFKIDKDFFSLLVLCSKLLSDCSSYVLITSHTPGHTPAFLQSLAM
EEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
RAFALDKQFWSSGESFCGLGDQALPSGVFAKWSL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
TYKLLDSGEGKKLESFGPITLIRPSCTAIWPKTTPSLWKKAHAEYVRSGEEGQWRCAVS
EEEEECCCCCCEECCCCCEEEECCCCCEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
IPESWRINLDIVDCTLKLTSFGHIGIFPEHSGFWPELQLSIERHSAYRVLNLFAHTGSTS
CCCCEEEEEEEEEEEEEEECCCEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCE
IFAAKCGAKVCHVDASKPAIKWAQKNVENNALPEKRIFWVVEDVFSFLQKEIRKGKKYDI
EEEECCCCEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
ILLDPPTYARGPNGEIFKIDKDFFSLLVLCSKLLSDCSSYVLITSHTPGHTPAFLQSLAM
EEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
RAFALDKQFWSSGESFCGLGDQALPSGVFAKWSL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA