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The map label for this gene is yjfH [C]

Identifier: 62184854

GI number: 62184854

Start: 231153

End: 231950

Strand: Direct

Name: yjfH [C]

Synonym: CAB210

Alternate gene names: 62184854

Gene position: 231153-231950 (Clockwise)

Preceding gene: 62184853

Following gene: 62184855

Centisome position: 20.2

GC content: 40.85

Gene sequence:

>798_bases
ATGGAGTTTATAGGAAAAAATAACCCTAAGGTAAAAGAAGCTGTCGCGTTAAAACATAACCGCTCTCGTAAAGGCCCGGT
CTTTCTTTTAGAGGGGTTTCGAGAGATTCAAAAAGCTCTAGCCTCGGGATATGAGTGTGAACGGATTTTTTGTGGAACAC
GTATTTCAGAAAAAGAACAAGCTTTTTTGCATACTATCCAAAAATTACCTTTAGAAAAGGTCTACTGCACAGAAGAAACG
CTTTCTAAACTTTCCTATAAAGAACATCACGACAATTTTATTGCTGTAATGAAGAAACGGTGGTGGTCTCGAAAAGAGTT
TTTAGCTCAAAAGAGAAATCCTCTGCCGTTTTATTTGATTATAGAACAGGTAGAAAAACCTGGCAATGTCGGGGCCATAC
TTAGAATAGCCGATGGGGTAGGGGCGGATGGCGTGATTCTATGCGATCCTATCGTCGATGTCTATAATCCTAATGTTATT
CGTTCTTCCTTAGGTACCGTATTTACCTTACCTATTTGGTCGGCCACTTTGGATCAGGTACAGCAAGTCATTCTTGAGGA
AAAATGGCATGCCTTTGTTACCTCTCCTAGAGCACATACCATGTATTTTTGTGAAAATTACAATCAACCGCTAGTTTTGG
TTTTTGGTTCTGAAAAAGATGGACTCACCGCATCTTGGCTCAGGGGAAATTTTTCAAAAATATCCTTACCCATGCTAGGT
CAAGCGGATTCTTTAAATTTATCTACGGCTGTATCCGCAGTGGCTTACGAAGTGGTTCGGCAGCGTTGGGAAGCCTAG

Upstream 100 bases:

>100_bases
TAGCTATGCGTGCCTTTGCTTTAGATAAACAGTTTTGGTCCTCAGGAGAAAGTTTTTGTGGCTTAGGAGATCAAGCTCTA
CCCTCAGGAGTGTTTGCTAA

Downstream 100 bases:

>100_bases
TCGAGTAGATCATCGGAAGAAAATATCGTTTACAAAATCAAAAATAGTTTATTTTGTTTATCACCAGAAAAGGATTAAAT
TAAAAAATATATGTGATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MEFIGKNNPKVKEAVALKHNRSRKGPVFLLEGFREIQKALASGYECERIFCGTRISEKEQAFLHTIQKLPLEKVYCTEET
LSKLSYKEHHDNFIAVMKKRWWSRKEFLAQKRNPLPFYLIIEQVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVI
RSSLGTVFTLPIWSATLDQVQQVILEEKWHAFVTSPRAHTMYFCENYNQPLVLVFGSEKDGLTASWLRGNFSKISLPMLG
QADSLNLSTAVSAVAYEVVRQRWEA

Sequences:

>Translated_265_residues
MEFIGKNNPKVKEAVALKHNRSRKGPVFLLEGFREIQKALASGYECERIFCGTRISEKEQAFLHTIQKLPLEKVYCTEET
LSKLSYKEHHDNFIAVMKKRWWSRKEFLAQKRNPLPFYLIIEQVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVI
RSSLGTVFTLPIWSATLDQVQQVILEEKWHAFVTSPRAHTMYFCENYNQPLVLVFGSEKDGLTASWLRGNFSKISLPMLG
QADSLNLSTAVSAVAYEVVRQRWEA
>Mature_265_residues
MEFIGKNNPKVKEAVALKHNRSRKGPVFLLEGFREIQKALASGYECERIFCGTRISEKEQAFLHTIQKLPLEKVYCTEET
LSKLSYKEHHDNFIAVMKKRWWSRKEFLAQKRNPLPFYLIIEQVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVI
RSSLGTVFTLPIWSATLDQVQQVILEEKWHAFVTSPRAHTMYFCENYNQPLVLVFGSEKDGLTASWLRGNFSKISLPMLG
QADSLNLSTAVSAVAYEVVRQRWEA

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=149, Percent_Identity=32.2147651006711, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 30148; Mature: 30148

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFIGKNNPKVKEAVALKHNRSRKGPVFLLEGFREIQKALASGYECERIFCGTRISEKEQ
CCCCCCCCCCHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
AFLHTIQKLPLEKVYCTEETLSKLSYKEHHDNFIAVMKKRWWSRKEFLAQKRNPLPFYLI
HHHHHHHHCCCHHHEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEE
IEQVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVIRSSLGTVFTLPIWSATLDQV
EEHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHCCCHHHHHCCCCEEEEHHHHHHHHHH
QQVILEEKWHAFVTSPRAHTMYFCENYNQPLVLVFGSEKDGLTASWLRGNFSKISLPMLG
HHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHCCCCCEECCCCCC
QADSLNLSTAVSAVAYEVVRQRWEA
CCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEFIGKNNPKVKEAVALKHNRSRKGPVFLLEGFREIQKALASGYECERIFCGTRISEKEQ
CCCCCCCCCCHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
AFLHTIQKLPLEKVYCTEETLSKLSYKEHHDNFIAVMKKRWWSRKEFLAQKRNPLPFYLI
HHHHHHHHCCCHHHEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEE
IEQVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVIRSSLGTVFTLPIWSATLDQV
EEHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHCCCHHHHHCCCCEEEEHHHHHHHHHH
QQVILEEKWHAFVTSPRAHTMYFCENYNQPLVLVFGSEKDGLTASWLRGNFSKISLPMLG
HHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHCCCCCEECCCCCC
QADSLNLSTAVSAVAYEVVRQRWEA
CCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]