Click here to switch to the map view.

The map label for this gene is yebC [C]

Identifier: 62184810

GI number: 62184810

Start: 175817

End: 176533

Strand: Direct

Name: yebC [C]

Synonym: CAB166

Alternate gene names: 62184810

Gene position: 175817-176533 (Clockwise)

Preceding gene: 62184809

Following gene: 62184812

Centisome position: 15.36

GC content: 42.54

Gene sequence:

>717_bases
ATGGCAGGACATAGTAAGTGGGCAAATACAAAATACCGTAAAGAACGAGCTGATCATAAGAGAGGGAAAATCTTTTCCCG
AACGATAAAAGAGTTAATGGCAGCTGTGAAAATGGGTGGTCCGGATCCTAAAACCAACGCACGCTTACGTATGATCATAC
AAAAGGCGAAAGATCAAAATATCCCCAATGAAAATATTGAAAGAAACCTCAAGAAAGCCACGTCTGCAGATCAGAAGAAT
TTTGAAAATGTGACTTATGAGCTTTATGGTCACGGAGGTGTGGGGATTATCGTCGAAGCCATGACGGATAATAAAAATCG
CACTGCCTCGGATATGCGTATAGCTGTGAATAAGCGAGGGGGATCCCTGGTTGAACCCGGCAGTGTTCTGTATAACTTTG
TTCGTAAGGGAGCCTGTTACGTGCCTAAGAGTTCCATAGATGAGGCTGTATTACTCCCTCATGTCATTGATGTAGGAGCT
GAAGATCTTGATAATGATGATGATGAGCATTTCCTTGTGCTCTGTGACCCCGTAGAATTAGCCTCTGTAAAAGAGAAGTT
AACCGCATTGGGTGTGGCATGCTCTGAGGAAAAGCTGATTTATGTTCCTTTACGTCTCGTAGATTGCGATGAACAAGACG
GTGAAGCCAATCTTGCTTTGATTGAATGGTTAGAGAAGATTGATGATGTTGATGAGGTATACCATAATATGGCCTAA

Upstream 100 bases:

>100_bases
TGTGAGAAGCGTTTTCCGTTATATGAAAGTGCCATAGCGTGGGAAAAAGCAAATATTTACGTATTGTTGCAAGGATATAA
ATCAAGAATAGGTAAGGAAG

Downstream 100 bases:

>100_bases
GGCTTTTCTAGATTAGAGAAAAGCCTTAGGTATCTATAGTCTACGAGCGCCGTTGTGGGGGTGGGGGAGGCGATCCCGTA
GCTTTAGATAACGTTTTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MAGHSKWANTKYRKERADHKRGKIFSRTIKELMAAVKMGGPDPKTNARLRMIIQKAKDQNIPNENIERNLKKATSADQKN
FENVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFVRKGACYVPKSSIDEAVLLPHVIDVGA
EDLDNDDDEHFLVLCDPVELASVKEKLTALGVACSEEKLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHNMA

Sequences:

>Translated_238_residues
MAGHSKWANTKYRKERADHKRGKIFSRTIKELMAAVKMGGPDPKTNARLRMIIQKAKDQNIPNENIERNLKKATSADQKN
FENVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFVRKGACYVPKSSIDEAVLLPHVIDVGA
EDLDNDDDEHFLVLCDPVELASVKEKLTALGVACSEEKLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHNMA
>Mature_237_residues
AGHSKWANTKYRKERADHKRGKIFSRTIKELMAAVKMGGPDPKTNARLRMIIQKAKDQNIPNENIERNLKKATSADQKNF
ENVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAVNKRGGSLVEPGSVLYNFVRKGACYVPKSSIDEAVLLPHVIDVGAE
DLDNDDDEHFLVLCDPVELASVKEKLTALGVACSEEKLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHNMA

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=245, Percent_Identity=31.4285714285714, Blast_Score=116, Evalue=1e-26,
Organism=Escherichia coli, GI1788171, Length=237, Percent_Identity=40.084388185654, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1788294, Length=236, Percent_Identity=32.2033898305085, Blast_Score=116, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17556100, Length=244, Percent_Identity=25.4098360655738, Blast_Score=85, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6321458, Length=172, Percent_Identity=36.6279069767442, Blast_Score=92, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24583305, Length=244, Percent_Identity=27.0491803278689, Blast_Score=92, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y166_CHLAB (Q5L6U7)

Other databases:

- EMBL:   CR848038
- RefSeq:   YP_219595.1
- HSSP:   P0A8A0
- ProteinModelPortal:   Q5L6U7
- SMR:   Q5L6U7
- GeneID:   3337790
- GenomeReviews:   CR848038_GR
- KEGG:   cab:CAB166
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- BioCyc:   CABO218497:CAB166-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26585; Mature: 26453

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWANTKYRKERADHKRGKIFSRTIKELMAAVKMGGPDPKTNARLRMIIQKAKDQN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
IPNENIERNLKKATSADQKNFENVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAVNKRG
CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCEEEEEECCC
GSLVEPGSVLYNFVRKGACYVPKSSIDEAVLLPHVIDVGAEDLDNDDDEHFLVLCDPVEL
CCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCEEEEEECCHHH
ASVKEKLTALGVACSEEKLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHNMA
HHHHHHHHHHCCEECCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AGHSKWANTKYRKERADHKRGKIFSRTIKELMAAVKMGGPDPKTNARLRMIIQKAKDQN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
IPNENIERNLKKATSADQKNFENVTYELYGHGGVGIIVEAMTDNKNRTASDMRIAVNKRG
CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCEEEEEECCC
GSLVEPGSVLYNFVRKGACYVPKSSIDEAVLLPHVIDVGAEDLDNDDDEHFLVLCDPVEL
CCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCEEEEEECCHHH
ASVKEKLTALGVACSEEKLIYVPLRLVDCDEQDGEANLALIEWLEKIDDVDEVYHNMA
HHHHHHHHHHCCEECCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA