| Definition | Chlamydophila abortus S26/3, complete genome. |
|---|---|
| Accession | NC_004552 |
| Length | 1,144,377 |
Click here to switch to the map view.
The map label for this gene is 62184710
Identifier: 62184710
GI number: 62184710
Start: 77681
End: 79186
Strand: Direct
Name: 62184710
Synonym: CAB063
Alternate gene names: NA
Gene position: 77681-79186 (Clockwise)
Preceding gene: 62184709
Following gene: 62184711
Centisome position: 6.79
GC content: 44.75
Gene sequence:
>1506_bases ATGGGAATTAATCCAAGCGGTCGCGGCAGTAATAATAATGATCTATGGATTTCCGGAGCTCACCATCAGCACGAGGACGT ACAAGATGCGGGTACAGGTCCATCCGGAGTAGTAGGGTCCCATAACATTTCTACCAAAAATAATACCCATGAAAGCTCGA GCTTTTTATCAAGAATCGCGTCTGCTGTACGGAGTTTCTTCGCTGGTATATTTGGTGATTCTTCCTCAAGAGCCAATTCT CGCGCCTCTACTCCTACACCATCCCCAACGAGTAGTCGCCGGTTTTCTGAGGATTCTTTCGGCTCATGTATGGATGTCAG TGGCGAGGAAGTGGATACACGGAGTGTCTCATCTTTTAGCAGTGTGGAGTCGAGTAGTGAAAAGAGCTTTAGTTCTTTGG ATAGCGCAAGATCGACAGAGGGTGCGGCTAGAGGATTACAAAAGAAAGGTTATACTCCAGGAATTAAAGTCGATATTCCC AAGGTGCCAGATCTCGCTTCAGGGCCAAAGCGTCCTAATACGCCACCGCCACCACCACCAACTTCTCCATCTGTAAAAAC ATCGCCGCGAGGTGTGAGTCCTTCTTCCTCACTCACGAAATCCAACACATCTTCAGTTGCTTCAGGAAGTAGTGCTACAC GACCTCTCAAACGTAAAGCTCCTCAACCTCCATCAGAAGGACCAACACAACCAAAATTACAACGTCGGGGCAGTACGTCT TCTATGTCTAGCATAGACTCTAATGACTCAACCGCGAGCAGGACCTCTCAAGAAATTTCCTCTGGAATAGCAGATAAATT AAAAGCGGAACTAGAAGCGCACCACAAGACAAAACAAGAACAATTAGCAAAGTTGTCCGACCAAATTAAAGAACGCTGGA CAAATCACGAAGCACAGGAGCCAATAGCGTACAAACTTGCCTGTTTACAGACAGTAACATCTAGGTTGGGCCAAGCACGC CTAGAGGCACAAAAAGAAATAAGTGTCTTGCGACCCGGAACTAGTGAATACCCCTTAAATACTGCTATTTCGTTATCTCG ATCTATATGGGACCTGGGAGAGAAAGAACAAAGACAAGATGGAGAATCTGTACTCCTTCCGGTATTGGTACGTATGGGTT TAGAAGGGCCGAAGTTAGGTCCTGACGAGGATTTTGTTAATTATGTTGATCAGATTATAAGTGAGTACGGAGAGCCAGAG GAAACGTATAACTGGCAAGGCACTTTGCAATCTCTAGCTCGTGATTTAAATTCTCTAAGAGAGACTAACCCTAACGGTAT GAAAAAGTTTTGGTCTTCGTTTGCCGGTAAGGGAGAAATCACTATGAGAATGATAGCGAATAGATTTGCCTCTGCGAATG TTGGGAAATACGATCCTAATTCAGTTCGAGTAGAGCGCCGTTGGAATACAGGAGCTCTAGATCTTATGAATTTTTTAAGC TCAGAAGCTTATGTAAAAACAGCTTCGATCTTAGCTTATGACGCTTTGAGTGTGTCAGAGGATTAA
Upstream 100 bases:
>100_bases TATTAATTTTGTTTCTTTTTTTAATAAAAGCATGCGCATTAATTAAAATTAATTTTAAAATTACAATTGTAAATTAGCGA AACTATTATGGAGAAAAGCT
Downstream 100 bases:
>100_bases GTAAGGATTCGCTATGGGAGCACCAATTTCAGGTGGTGGAGGCGTAGAACCTCCTTGGAAAGATCTATTCACAGATAAGG AATTTTCAGTAGAAGGTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 501; Mature: 500
Protein sequence:
>501_residues MGINPSGRGSNNNDLWISGAHHQHEDVQDAGTGPSGVVGSHNISTKNNTHESSSFLSRIASAVRSFFAGIFGDSSSRANS RASTPTPSPTSSRRFSEDSFGSCMDVSGEEVDTRSVSSFSSVESSSEKSFSSLDSARSTEGAARGLQKKGYTPGIKVDIP KVPDLASGPKRPNTPPPPPPTSPSVKTSPRGVSPSSSLTKSNTSSVASGSSATRPLKRKAPQPPSEGPTQPKLQRRGSTS SMSSIDSNDSTASRTSQEISSGIADKLKAELEAHHKTKQEQLAKLSDQIKERWTNHEAQEPIAYKLACLQTVTSRLGQAR LEAQKEISVLRPGTSEYPLNTAISLSRSIWDLGEKEQRQDGESVLLPVLVRMGLEGPKLGPDEDFVNYVDQIISEYGEPE ETYNWQGTLQSLARDLNSLRETNPNGMKKFWSSFAGKGEITMRMIANRFASANVGKYDPNSVRVERRWNTGALDLMNFLS SEAYVKTASILAYDALSVSED
Sequences:
>Translated_501_residues MGINPSGRGSNNNDLWISGAHHQHEDVQDAGTGPSGVVGSHNISTKNNTHESSSFLSRIASAVRSFFAGIFGDSSSRANS RASTPTPSPTSSRRFSEDSFGSCMDVSGEEVDTRSVSSFSSVESSSEKSFSSLDSARSTEGAARGLQKKGYTPGIKVDIP KVPDLASGPKRPNTPPPPPPTSPSVKTSPRGVSPSSSLTKSNTSSVASGSSATRPLKRKAPQPPSEGPTQPKLQRRGSTS SMSSIDSNDSTASRTSQEISSGIADKLKAELEAHHKTKQEQLAKLSDQIKERWTNHEAQEPIAYKLACLQTVTSRLGQAR LEAQKEISVLRPGTSEYPLNTAISLSRSIWDLGEKEQRQDGESVLLPVLVRMGLEGPKLGPDEDFVNYVDQIISEYGEPE ETYNWQGTLQSLARDLNSLRETNPNGMKKFWSSFAGKGEITMRMIANRFASANVGKYDPNSVRVERRWNTGALDLMNFLS SEAYVKTASILAYDALSVSED >Mature_500_residues GINPSGRGSNNNDLWISGAHHQHEDVQDAGTGPSGVVGSHNISTKNNTHESSSFLSRIASAVRSFFAGIFGDSSSRANSR ASTPTPSPTSSRRFSEDSFGSCMDVSGEEVDTRSVSSFSSVESSSEKSFSSLDSARSTEGAARGLQKKGYTPGIKVDIPK VPDLASGPKRPNTPPPPPPTSPSVKTSPRGVSPSSSLTKSNTSSVASGSSATRPLKRKAPQPPSEGPTQPKLQRRGSTSS MSSIDSNDSTASRTSQEISSGIADKLKAELEAHHKTKQEQLAKLSDQIKERWTNHEAQEPIAYKLACLQTVTSRLGQARL EAQKEISVLRPGTSEYPLNTAISLSRSIWDLGEKEQRQDGESVLLPVLVRMGLEGPKLGPDEDFVNYVDQIISEYGEPEE TYNWQGTLQSLARDLNSLRETNPNGMKKFWSSFAGKGEITMRMIANRFASANVGKYDPNSVRVERRWNTGALDLMNFLSS EAYVKTASILAYDALSVSED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54049; Mature: 53918
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGINPSGRGSNNNDLWISGAHHQHEDVQDAGTGPSGVVGSHNISTKNNTHESSSFLSRIA CCCCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH SAVRSFFAGIFGDSSSRANSRASTPTPSPTSSRRFSEDSFGSCMDVSGEEVDTRSVSSFS HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH SVESSSEKSFSSLDSARSTEGAARGLQKKGYTPGIKVDIPKVPDLASGPKRPNTPPPPPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC TSPSVKTSPRGVSPSSSLTKSNTSSVASGSSATRPLKRKAPQPPSEGPTQPKLQRRGSTS CCCCCCCCCCCCCCCCHHHCCCCHHHHCCCHHCCCHHHCCCCCCCCCCCCHHHHHCCCCH SMSSIDSNDSTASRTSQEISSGIADKLKAELEAHHKTKQEQLAKLSDQIKERWTNHEAQE HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PIAYKLACLQTVTSRLGQARLEAQKEISVLRPGTSEYPLNTAISLSRSIWDLGEKEQRQD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCC GESVLLPVLVRMGLEGPKLGPDEDFVNYVDQIISEYGEPEETYNWQGTLQSLARDLNSLR CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHH ETNPNGMKKFWSSFAGKGEITMRMIANRFASANVGKYDPNSVRVERRWNTGALDLMNFLS HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHH SEAYVKTASILAYDALSVSED HHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GINPSGRGSNNNDLWISGAHHQHEDVQDAGTGPSGVVGSHNISTKNNTHESSSFLSRIA CCCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH SAVRSFFAGIFGDSSSRANSRASTPTPSPTSSRRFSEDSFGSCMDVSGEEVDTRSVSSFS HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH SVESSSEKSFSSLDSARSTEGAARGLQKKGYTPGIKVDIPKVPDLASGPKRPNTPPPPPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC TSPSVKTSPRGVSPSSSLTKSNTSSVASGSSATRPLKRKAPQPPSEGPTQPKLQRRGSTS CCCCCCCCCCCCCCCCHHHCCCCHHHHCCCHHCCCHHHCCCCCCCCCCCCHHHHHCCCCH SMSSIDSNDSTASRTSQEISSGIADKLKAELEAHHKTKQEQLAKLSDQIKERWTNHEAQE HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PIAYKLACLQTVTSRLGQARLEAQKEISVLRPGTSEYPLNTAISLSRSIWDLGEKEQRQD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCC GESVLLPVLVRMGLEGPKLGPDEDFVNYVDQIISEYGEPEETYNWQGTLQSLARDLNSLR CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHH ETNPNGMKKFWSSFAGKGEITMRMIANRFASANVGKYDPNSVRVERRWNTGALDLMNFLS HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHH SEAYVKTASILAYDALSVSED HHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA