| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is hemH
Identifier: 28572888
GI number: 28572888
Start: 843450
End: 844625
Strand: Reverse
Name: hemH
Synonym: TW747
Alternate gene names: 28572888
Gene position: 844625-843450 (Counterclockwise)
Preceding gene: 28572889
Following gene: 28572887
Centisome position: 91.22
GC content: 49.74
Gene sequence:
>1176_bases GTGATACGCCGTAGCGCAGTGTCACGTGTCGTTGCTGAGGGTTCGGCTATTGCCTCGGATTCTGGGTTCGCACTCGGTGC TTCGCAATACGATGCGGTTGTTCTTCTAAGTTTTGGCGGCCCAGAAGGTCCAGAAGATGTTGTCCCTTTCCTGAAAAAGG TGACAAGCGGTAGAGGTGTGCCAGATGAGCGCCTCTACGAGGTCGCAGAGCATTACAATCATTTTTCTGGCATAAGTCCA ATAAATGATTGTAATAGGCGACTGAGGGGTGCATTAGAAAAAGAGCTCTTTAGCAGGGGGATTAGAATTCCTGTGCTGTG GGCCAACCGTAATTGGCAACCGCAACTGGAAGAAGTGCTGCGAGAAGCTTATGACAGGGGCTTTCGGGCTTTTTTGACAC TTTTCACAAGTGCCTATAGTTGTTACTCGAGCTGTCGACAGTACAGAGAAGATATTGCCCATGCGGTAGAACGTGCTGGG CTTTCCGGAAGGATTATTGTGGACAAGCTACGGCAGTTCTTTGATCACCCGGGGTTTGTTTTACCATTTATCGAAGGGAT TCAAGATTGCCTGGAACAGGTTAAAGAGAGAGGATTCAAGGTCTCGCGTACGGCAATTCTTTTTAGCACTCATTCGATCC CCGAATTGGATGCTGCATTTTCGGGTCCTGAAGATGCGCATTTCGGAAAGTATGGTGCATATGTTTCGCAGCACAAGGCT GTTGTTGAGGTTATTATGTCAAGACTGCGTGTAACTGACCCGGACTTGCAAAATTATCAGTTGGTCTATCAGTCGCGCAG TGGGGATCCAAGCACTCCTTGGCTTGAGCCTGATATCAATGATGCAATCAGGGTTTTGAGGGGTTGCGAAGCTGTTCTTA TTGTTCCTCTTGGTTTTATCAGTGATCATATGGAAGTATTGTGGGATCTTGATAATGAGTCCATGCAGACCGCCCGGGAA TGTGGGTTATTTGCTATTAGAACCCCCACTCCGGGGACTCACCCCCTGTATATTTCGGGTATGGTTGATCTCATTGTAGA AAGACTTGAAGGAGTGCCGAGGAGCGCTCGCCCGGCCATGACGGACCTTGGGCCTTGGTTCGATGTCTGCCAACCGGGGT GCTGCAAAAACAGTCGCTCCGGGTTCAAGCCAGCGTACGGCGGTGTAGCGCCCTAG
Upstream 100 bases:
>100_bases CCCTGCGCTATACCCGGGCGCGGCGGTATGTTTTACTGGAAACCCCTTTTTACACGGGGCGGCGTATAGGTATAGCTGAT GTCCAGGAAGTTTTATCTAC
Downstream 100 bases:
>100_bases ATCTGCTTTTATGTATCCGTTACGCATTGGCACGCGTTCGAGCCTTCTTGCGACCGCACAGACGGCACAGGTACAAAAAA CTATGCGCGATGTATTTTTG
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MIRRSAVSRVVAEGSAIASDSGFALGASQYDAVVLLSFGGPEGPEDVVPFLKKVTSGRGVPDERLYEVAEHYNHFSGISP INDCNRRLRGALEKELFSRGIRIPVLWANRNWQPQLEEVLREAYDRGFRAFLTLFTSAYSCYSSCRQYREDIAHAVERAG LSGRIIVDKLRQFFDHPGFVLPFIEGIQDCLEQVKERGFKVSRTAILFSTHSIPELDAAFSGPEDAHFGKYGAYVSQHKA VVEVIMSRLRVTDPDLQNYQLVYQSRSGDPSTPWLEPDINDAIRVLRGCEAVLIVPLGFISDHMEVLWDLDNESMQTARE CGLFAIRTPTPGTHPLYISGMVDLIVERLEGVPRSARPAMTDLGPWFDVCQPGCCKNSRSGFKPAYGGVAP
Sequences:
>Translated_391_residues MIRRSAVSRVVAEGSAIASDSGFALGASQYDAVVLLSFGGPEGPEDVVPFLKKVTSGRGVPDERLYEVAEHYNHFSGISP INDCNRRLRGALEKELFSRGIRIPVLWANRNWQPQLEEVLREAYDRGFRAFLTLFTSAYSCYSSCRQYREDIAHAVERAG LSGRIIVDKLRQFFDHPGFVLPFIEGIQDCLEQVKERGFKVSRTAILFSTHSIPELDAAFSGPEDAHFGKYGAYVSQHKA VVEVIMSRLRVTDPDLQNYQLVYQSRSGDPSTPWLEPDINDAIRVLRGCEAVLIVPLGFISDHMEVLWDLDNESMQTARE CGLFAIRTPTPGTHPLYISGMVDLIVERLEGVPRSARPAMTDLGPWFDVCQPGCCKNSRSGFKPAYGGVAP >Mature_391_residues MIRRSAVSRVVAEGSAIASDSGFALGASQYDAVVLLSFGGPEGPEDVVPFLKKVTSGRGVPDERLYEVAEHYNHFSGISP INDCNRRLRGALEKELFSRGIRIPVLWANRNWQPQLEEVLREAYDRGFRAFLTLFTSAYSCYSSCRQYREDIAHAVERAG LSGRIIVDKLRQFFDHPGFVLPFIEGIQDCLEQVKERGFKVSRTAILFSTHSIPELDAAFSGPEDAHFGKYGAYVSQHKA VVEVIMSRLRVTDPDLQNYQLVYQSRSGDPSTPWLEPDINDAIRVLRGCEAVLIVPLGFISDHMEVLWDLDNESMQTARE CGLFAIRTPTPGTHPLYISGMVDLIVERLEGVPRSARPAMTDLGPWFDVCQPGCCKNSRSGFKPAYGGVAP
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family
Homologues:
Organism=Homo sapiens, GI60499025, Length=374, Percent_Identity=25.9358288770053, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI60499021, Length=374, Percent_Identity=25.9358288770053, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI17864156, Length=382, Percent_Identity=27.2251308900524, Blast_Score=105, Evalue=7e-23, Organism=Drosophila melanogaster, GI45552018, Length=212, Percent_Identity=31.6037735849057, Blast_Score=90, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HEMH_TROW8 (Q83H94)
Other databases:
- EMBL: BX251412 - RefSeq: NP_789668.1 - ProteinModelPortal: Q83H94 - STRING: Q83H94 - GeneID: 1064947 - GenomeReviews: BX072543_GR - KEGG: tws:TW747 - eggNOG: COG0276 - HOGENOM: HBG697135 - OMA: GNRNWHP - ProtClustDB: PRK00035 - BioCyc: TWHI218496:TW0713-MONOMER - GO: GO:0005737 - HAMAP: MF_00323 - InterPro: IPR001015 - InterPro: IPR019772 - PANTHER: PTHR11108
Pfam domain/function: PF00762 Ferrochelatase
EC number: =4.99.1.1
Molecular weight: Translated: 43522; Mature: 43522
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRRSAVSRVVAEGSAIASDSGFALGASQYDAVVLLSFGGPEGPEDVVPFLKKVTSGRGV CCCHHHHHHHHHCCCCEECCCCCEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC PDERLYEVAEHYNHFSGISPINDCNRRLRGALEKELFSRGIRIPVLWANRNWQPQLEEVL CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH REAYDRGFRAFLTLFTSAYSCYSSCRQYREDIAHAVERAGLSGRIIVDKLRQFFDHPGFV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCH LPFIEGIQDCLEQVKERGFKVSRTAILFSTHSIPELDAAFSGPEDAHFGKYGAYVSQHKA HHHHHHHHHHHHHHHHCCCEEEHEEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHH VVEVIMSRLRVTDPDLQNYQLVYQSRSGDPSTPWLEPDINDAIRVLRGCEAVLIVPLGFI HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHH SDHMEVLWDLDNESMQTARECGLFAIRTPTPGTHPLYISGMVDLIVERLEGVPRSARPAM HHHHHHHHCCCCHHHHHHHHCCEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCH TDLGPWFDVCQPGCCKNSRSGFKPAYGGVAP HHCCCCHHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIRRSAVSRVVAEGSAIASDSGFALGASQYDAVVLLSFGGPEGPEDVVPFLKKVTSGRGV CCCHHHHHHHHHCCCCEECCCCCEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC PDERLYEVAEHYNHFSGISPINDCNRRLRGALEKELFSRGIRIPVLWANRNWQPQLEEVL CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH REAYDRGFRAFLTLFTSAYSCYSSCRQYREDIAHAVERAGLSGRIIVDKLRQFFDHPGFV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCH LPFIEGIQDCLEQVKERGFKVSRTAILFSTHSIPELDAAFSGPEDAHFGKYGAYVSQHKA HHHHHHHHHHHHHHHHCCCEEEHEEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHH VVEVIMSRLRVTDPDLQNYQLVYQSRSGDPSTPWLEPDINDAIRVLRGCEAVLIVPLGFI HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHH SDHMEVLWDLDNESMQTARECGLFAIRTPTPGTHPLYISGMVDLIVERLEGVPRSARPAM HHHHHHHHCCCCHHHHHHHHCCEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCH TDLGPWFDVCQPGCCKNSRSGFKPAYGGVAP HHCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12606174