| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572876
Identifier: 28572876
GI number: 28572876
Start: 829742
End: 830185
Strand: Reverse
Name: 28572876
Synonym: TW735
Alternate gene names: NA
Gene position: 830185-829742 (Counterclockwise)
Preceding gene: 28572877
Following gene: 28572875
Centisome position: 89.66
GC content: 47.07
Gene sequence:
>444_bases GTGCTCGATTTATTCAAAATGCCCTTGGGGTCACAAATTTTCTCTGACACAAAACTTGTTTCGCGCGACGATCTCGTACG TTATGCCGCTGCAAGCGGTGACTTCAATCCAATTCACTACCGTGATGACTTTGCCAGGGCCGTCGGGCTTCCTGGTGTTA TATGCCATGGAATGCTGACAATGGCTTTGGCAATTGCCCCTCTTATGACCCAGCTGGGCACCGATGTCTCTAGACTGTCT TCCTATGGCGTACGCTTCTCAAAACCTGTTCCCGTCCCAGTCGGTAAAAACCCACTTGATGAACAATCCGTCGGAGCCTT GTTATCGATAAAAGCTTTTCTGAGAAAGCGGGAGGATAGCAAAGCTATTATTGAGCTCATTGTGTCTCTGGATGATGAAA CCGTCCTCACAAAGGCCTTTGCGGAAATATCACTAAAAATATAA
Upstream 100 bases:
>100_bases GGGGAGATCTTCGTGGGCTGCCTATCAAGGAGAGGAAATGAGTGGGGTAAATCCACAGACCGGACCAAATTGCGCTCTGC CAGAAGGGATGTCAAGTTAG
Downstream 100 bases:
>100_bases AAACCTGCGAAACACTATATATAGTAGTTTGACTTCTGCGTAGGCACATTATATACTGATAATCAGATGCGCTCGTGCCC TGTTTTTGGGGCTTGTGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: MaoC Domain Protein Dehydratase; MaoC Domain-Containing Protein Dehydratase; Acyl Dehydratase; MaoC-Like Dehydratase; MaoC Family Protein; MaoC Like Domain-Containing Protein; MaoC-Like Domain-Containing Protein; R_hydratase_like -Hydratase
Number of amino acids: Translated: 147; Mature: 147
Protein sequence:
>147_residues MLDLFKMPLGSQIFSDTKLVSRDDLVRYAAASGDFNPIHYRDDFARAVGLPGVICHGMLTMALAIAPLMTQLGTDVSRLS SYGVRFSKPVPVPVGKNPLDEQSVGALLSIKAFLRKREDSKAIIELIVSLDDETVLTKAFAEISLKI
Sequences:
>Translated_147_residues MLDLFKMPLGSQIFSDTKLVSRDDLVRYAAASGDFNPIHYRDDFARAVGLPGVICHGMLTMALAIAPLMTQLGTDVSRLS SYGVRFSKPVPVPVGKNPLDEQSVGALLSIKAFLRKREDSKAIIELIVSLDDETVLTKAFAEISLKI >Mature_147_residues MLDLFKMPLGSQIFSDTKLVSRDDLVRYAAASGDFNPIHYRDDFARAVGLPGVICHGMLTMALAIAPLMTQLGTDVSRLS SYGVRFSKPVPVPVGKNPLDEQSVGALLSIKAFLRKREDSKAIIELIVSLDDETVLTKAFAEISLKI
Specific function: Unknown
COG id: COG2030
COG function: function code I; Acyl dehydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16038; Mature: 16038
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDLFKMPLGSQIFSDTKLVSRDDLVRYAAASGDFNPIHYRDDFARAVGLPGVICHGMLT CCCCCCCCCCCHHHHCCHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH MALAIAPLMTQLGTDVSRLSSYGVRFSKPVPVPVGKNPLDEQSVGALLSIKAFLRKREDS HHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH KAIIELIVSLDDETVLTKAFAEISLKI HHHHHHHHHCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MLDLFKMPLGSQIFSDTKLVSRDDLVRYAAASGDFNPIHYRDDFARAVGLPGVICHGMLT CCCCCCCCCCCHHHHCCHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH MALAIAPLMTQLGTDVSRLSSYGVRFSKPVPVPVGKNPLDEQSVGALLSIKAFLRKREDS HHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH KAIIELIVSLDDETVLTKAFAEISLKI HHHHHHHHHCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA