| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is murB
Identifier: 28572875
GI number: 28572875
Start: 828402
End: 829457
Strand: Reverse
Name: murB
Synonym: TW734
Alternate gene names: 28572875
Gene position: 829457-828402 (Counterclockwise)
Preceding gene: 28572876
Following gene: 28572873
Centisome position: 89.58
GC content: 47.63
Gene sequence:
>1056_bases TTGGTTTCTTTTTCTGAGATTACGACCCTCGGCGTCGGTGGCTCAATTGCTTGTTTTATTGAGTGTTCGCCGGATGAGTT TGTTGAGCGCGCGCCCGGACTGTTTCGCCCCGGTCATCATGTTCTTGTAGTTGGTGGCGGGAGCAATCTTGTTGCTTCTG ATTGCCCCTTTCCGGGTACAGTTGTTAGATTAAAGAGCCGCGATACTATCATCTCTGATGACGGCAACTATACAAGGTTC AGCGTTTCGGCTGGTACATCTTGGGATGATCTGGTTAGCTACACGCTTGATTTGGGCTTTGATCAGCTCTCACCCATGTC TGGCATACCTGGGACTTTTGGCGGCGCGCTTGCCCAGAATATCTCTGCCTACGGTGCAGCTGTGCGTGATGTACTAGGCA GTGTGGAGGTATATGACGCTTGTACGAGTGAGGTTGTCACTTTCGGCCTTGAAGATATGAGGTACGGATATAGAACATCA GCTTTAAAAAATGTACGCAATAAGGTTATTCTCGGCGGCACATTATTGTTAAAGCCTGGCCCAACTCCGGTTTTGTATAG GCAATTGGCTAATGCACTAAAAGTAGACCTTGGAACTTACTGTTCAGGAAAACAGGTAAGAGACCAAGTATTGCGTATCA GGGCTGAGAAGGGAATGCTCCCCCGATACCTTGTGCCTAAAGGATTTGACGTCTGTAACACATCAAGCGTTGGGTCATTT TTTGTCAATCCCATTGTCTCAAAAGAACATTTGAGCAGGCTTAGGCGCCTTGTCCCACAGGGTGCGCTGAACAGTTCTGT TATTCAGACTGATGAGATGGGAGGGGTGAAAGTAAGCGCTGCGTTTCTGCTAGAGCAGAGTGGATTTGAAAAGGGATTTT GTATTTCCGGATCACAAGCGGCGATTTCAACTCAACATAGCCTTGCGATAGTAAACAGGGGTGGTGCAACTGCCGCCGAA GTGATTGAACTTGCAGGACTTATTACACGAACCGTCTCAAGAAAATTCGATATACACCTCATTCCTGAGCCGGTTTTTGT TGGTCTCGAACTGTAG
Upstream 100 bases:
>100_bases TAGTGACAATATCGATGGCTTCCAGGTTCCGATTGACCCTATGGAGCTTTTGCAGTGCGATAGCTGCCAGTAATCCTGGC AGCTTGTCTCGTGAATTTCT
Downstream 100 bases:
>100_bases ACTCAAAATACCTTCGTCATGTCGGAGTTCGCTGTATCAAAGAATTCCACAAGCCGTCCTGTTCCCTCCAGCAAACTTGT TTCATCTAGGGCGTATGAAA
Product: UDP-N-acetylenolpyruvoylglucosamine reductase
Products: NA
Alternate protein names: UDP-N-acetylmuramate dehydrogenase
Number of amino acids: Translated: 351; Mature: 351
Protein sequence:
>351_residues MVSFSEITTLGVGGSIACFIECSPDEFVERAPGLFRPGHHVLVVGGGSNLVASDCPFPGTVVRLKSRDTIISDDGNYTRF SVSAGTSWDDLVSYTLDLGFDQLSPMSGIPGTFGGALAQNISAYGAAVRDVLGSVEVYDACTSEVVTFGLEDMRYGYRTS ALKNVRNKVILGGTLLLKPGPTPVLYRQLANALKVDLGTYCSGKQVRDQVLRIRAEKGMLPRYLVPKGFDVCNTSSVGSF FVNPIVSKEHLSRLRRLVPQGALNSSVIQTDEMGGVKVSAAFLLEQSGFEKGFCISGSQAAISTQHSLAIVNRGGATAAE VIELAGLITRTVSRKFDIHLIPEPVFVGLEL
Sequences:
>Translated_351_residues MVSFSEITTLGVGGSIACFIECSPDEFVERAPGLFRPGHHVLVVGGGSNLVASDCPFPGTVVRLKSRDTIISDDGNYTRF SVSAGTSWDDLVSYTLDLGFDQLSPMSGIPGTFGGALAQNISAYGAAVRDVLGSVEVYDACTSEVVTFGLEDMRYGYRTS ALKNVRNKVILGGTLLLKPGPTPVLYRQLANALKVDLGTYCSGKQVRDQVLRIRAEKGMLPRYLVPKGFDVCNTSSVGSF FVNPIVSKEHLSRLRRLVPQGALNSSVIQTDEMGGVKVSAAFLLEQSGFEKGFCISGSQAAISTQHSLAIVNRGGATAAE VIELAGLITRTVSRKFDIHLIPEPVFVGLEL >Mature_351_residues MVSFSEITTLGVGGSIACFIECSPDEFVERAPGLFRPGHHVLVVGGGSNLVASDCPFPGTVVRLKSRDTIISDDGNYTRF SVSAGTSWDDLVSYTLDLGFDQLSPMSGIPGTFGGALAQNISAYGAAVRDVLGSVEVYDACTSEVVTFGLEDMRYGYRTS ALKNVRNKVILGGTLLLKPGPTPVLYRQLANALKVDLGTYCSGKQVRDQVLRIRAEKGMLPRYLVPKGFDVCNTSSVGSF FVNPIVSKEHLSRLRRLVPQGALNSSVIQTDEMGGVKVSAAFLLEQSGFEKGFCISGSQAAISTQHSLAIVNRGGATAAE VIELAGLITRTVSRKFDIHLIPEPVFVGLEL
Specific function: Cell wall formation
COG id: COG0812
COG function: function code M; UDP-N-acetylmuramate dehydrogenase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding PCMH-type domain
Homologues:
Organism=Escherichia coli, GI1790407, Length=350, Percent_Identity=30, Blast_Score=122, Evalue=5e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MURB_TROW8 (Q83HA7)
Other databases:
- EMBL: BX251412 - RefSeq: NP_789655.1 - ProteinModelPortal: Q83HA7 - SMR: Q83HA7 - STRING: Q83HA7 - GeneID: 1064934 - GenomeReviews: BX072543_GR - KEGG: tws:TW734 - eggNOG: COG0812 - HOGENOM: HBG686573 - OMA: GAAPMQN - PhylomeDB: Q83HA7 - ProtClustDB: CLSK230247 - BioCyc: TWHI218496:TW0700-MONOMER - GO: GO:0005737 - HAMAP: MF_00037 - InterPro: IPR016169 - InterPro: IPR016166 - InterPro: IPR016167 - InterPro: IPR003170 - InterPro: IPR011601 - InterPro: IPR006094 - Gene3D: G3DSA:3.30.465.10 - Gene3D: G3DSA:3.30.43.10 - Gene3D: G3DSA:3.90.78.10 - PANTHER: PTHR21071 - TIGRFAMs: TIGR00179
Pfam domain/function: PF01565 FAD_binding_4; PF02873 MurB_C; SSF56176 FAD-binding_2; SSF56194 MurB_C
EC number: =1.1.1.158
Molecular weight: Translated: 37447; Mature: 37447
Theoretical pI: Translated: 6.99; Mature: 6.99
Prosite motif: PS51387 FAD_PCMH
Important sites: ACT_SITE 158-158 ACT_SITE 239-239 ACT_SITE 343-343
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSFSEITTLGVGGSIACFIECSPDEFVERAPGLFRPGHHVLVVGGGSNLVASDCPFPGT CCCHHHEEEECCCCCEEEEEECCHHHHHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCE VVRLKSRDTIISDDGNYTRFSVSAGTSWDDLVSYTLDLGFDQLSPMSGIPGTFGGALAQN EEEEECCCEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHH ISAYGAAVRDVLGSVEVYDACTSEVVTFGLEDMRYGYRTSALKNVRNKVILGGTLLLKPG HHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHCEEEECEEEEECCC PTPVLYRQLANALKVDLGTYCSGKQVRDQVLRIRAEKGMLPRYLVPKGFDVCNTSSVGSF CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHH FVNPIVSKEHLSRLRRLVPQGALNSSVIQTDEMGGVKVSAAFLLEQSGFEKGFCISGSQA HHCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEHEEEEHHCCCCCCEEECCCCC AISTQHSLAIVNRGGATAAEVIELAGLITRTVSRKFDIHLIPEPVFVGLEL EEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEC >Mature Secondary Structure MVSFSEITTLGVGGSIACFIECSPDEFVERAPGLFRPGHHVLVVGGGSNLVASDCPFPGT CCCHHHEEEECCCCCEEEEEECCHHHHHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCE VVRLKSRDTIISDDGNYTRFSVSAGTSWDDLVSYTLDLGFDQLSPMSGIPGTFGGALAQN EEEEECCCEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHH ISAYGAAVRDVLGSVEVYDACTSEVVTFGLEDMRYGYRTSALKNVRNKVILGGTLLLKPG HHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHCEEEECEEEEECCC PTPVLYRQLANALKVDLGTYCSGKQVRDQVLRIRAEKGMLPRYLVPKGFDVCNTSSVGSF CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHH FVNPIVSKEHLSRLRRLVPQGALNSSVIQTDEMGGVKVSAAFLLEQSGFEKGFCISGSQA HHCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEHEEEEHHCCCCCCEEECCCCC AISTQHSLAIVNRGGATAAEVIELAGLITRTVSRKFDIHLIPEPVFVGLEL EEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12606174