| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
Click here to switch to the map view.
The map label for this gene is znuA [C]
Identifier: 28572826
GI number: 28572826
Start: 773383
End: 774351
Strand: Direct
Name: znuA [C]
Synonym: TW685
Alternate gene names: 28572826
Gene position: 773383-774351 (Clockwise)
Preceding gene: 28572825
Following gene: 28572827
Centisome position: 83.52
GC content: 49.43
Gene sequence:
>969_bases TTGTCAAACGAAGGCGCCTCTTCATCCGGAAGTCTGGTCCGGCGATCGGTTTTACGGCGTCTGGTCTTTTGGGCTGCTGC ATTCGTGTCTGTGTCTCTGTTTACTACTGCCTGTCTTGCCAAAAGCGAGGATAAAACAGTTAAGCCAGTCGTGTACACCT CGTTCGGGGTATTGGAAAGCATAACCAAGAGTATTGCCGGCGATAAACTGACGGTGCGCAGCATAGTGCCACAGGGCGGG TCTGTGCACGAATATGAGCCAAAGCCAAGTGATGTAAAAGATCTTGCAAACGCAAAGATGTTAATCGTAAATGGCCTTCA TCTGGAGGATGAGTGGCTCGATAAGGTCCTGGTTGACTTCAAGGGCGTAAAGGTCACTGCCTCGAAGGGTATTGCGCCAA TTCTAATCGCCGAAGACAGATCTTCCGGTACCCCCAATCCGCATGCATGGGTCTCTCCAAAGGATGGTGCGATATACGCA AAAAACATAACAGAGTTCCTGAGTGAGCTTGACCCGAAGAATAAGGCCTATTACCAAGAACATGGCGGGGCGTTGGAAAA GAGGTTGCAGAGTCTGTCAGAAGAATTTGAGAAATCCATTGCAAAGATTCCTGCCGCGTACAGGGCTCTAGTCACCTGCG AGGGGGCTTTTAGTTACGTGGCGCAGGCGGGAGGTCTGGAGGAAAGGTATCTATGGCCCGTCAATGGCGAAAATGCCGAG ACATCCAAAAAAGTTGGCGAGCTTGTTGACTTTGTGAAGGGGCGCAAGCTTCCGTATGTGTTCTGCGAATACGGAGTAAA TACGAAATTTATCGAGCAGGTAATTCATGATTCTGGCGGCATCGCAAAATTGGGTGGCCTGTTTTACGTAGACGGGTTGG TTGACAAAGATGGTCACGCCATTACGTACGAGCAAGCCATAGAGCAGAATATAAAGGTGATTTCTGAAACCCTTGGGTCA AGCAGATAG
Upstream 100 bases:
>100_bases GGTGTGTCTGTAGGAGGTTTATGTGTCTGTAGGGGGTTTAATCGTGCAGTTCTTGAGCAATCGTTCGGCTGGGTTGTGTG AGTCTATTACCGGAGGGGTT
Downstream 100 bases:
>100_bases AGTAGTGAACGGTTTTCGCTGCGGAACCGGCAAGGTTGTGATGTGCTGAGAGGCTCCGTCCTGTCTGTCAGTGACTTGTC AGTGGTTTATGGCGACGTTG
Product: ABC-transporter periplasmic solute-binding subunit
Products: Zn (II) [Cytoplasm]; ADP; phosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MSNEGASSSGSLVRRSVLRRLVFWAAAFVSVSLFTTACLAKSEDKTVKPVVYTSFGVLESITKSIAGDKLTVRSIVPQGG SVHEYEPKPSDVKDLANAKMLIVNGLHLEDEWLDKVLVDFKGVKVTASKGIAPILIAEDRSSGTPNPHAWVSPKDGAIYA KNITEFLSELDPKNKAYYQEHGGALEKRLQSLSEEFEKSIAKIPAAYRALVTCEGAFSYVAQAGGLEERYLWPVNGENAE TSKKVGELVDFVKGRKLPYVFCEYGVNTKFIEQVIHDSGGIAKLGGLFYVDGLVDKDGHAITYEQAIEQNIKVISETLGS SR
Sequences:
>Translated_322_residues MSNEGASSSGSLVRRSVLRRLVFWAAAFVSVSLFTTACLAKSEDKTVKPVVYTSFGVLESITKSIAGDKLTVRSIVPQGG SVHEYEPKPSDVKDLANAKMLIVNGLHLEDEWLDKVLVDFKGVKVTASKGIAPILIAEDRSSGTPNPHAWVSPKDGAIYA KNITEFLSELDPKNKAYYQEHGGALEKRLQSLSEEFEKSIAKIPAAYRALVTCEGAFSYVAQAGGLEERYLWPVNGENAE TSKKVGELVDFVKGRKLPYVFCEYGVNTKFIEQVIHDSGGIAKLGGLFYVDGLVDKDGHAITYEQAIEQNIKVISETLGS SR >Mature_321_residues SNEGASSSGSLVRRSVLRRLVFWAAAFVSVSLFTTACLAKSEDKTVKPVVYTSFGVLESITKSIAGDKLTVRSIVPQGGS VHEYEPKPSDVKDLANAKMLIVNGLHLEDEWLDKVLVDFKGVKVTASKGIAPILIAEDRSSGTPNPHAWVSPKDGAIYAK NITEFLSELDPKNKAYYQEHGGALEKRLQSLSEEFEKSIAKIPAAYRALVTCEGAFSYVAQAGGLEERYLWPVNGENAET SKKVGELVDFVKGRKLPYVFCEYGVNTKFIEQVIHDSGGIAKLGGLFYVDGLVDKDGHAITYEQAIEQNIKVISETLGSS R
Specific function: Part of an ATP-driven transport system HI_0359/HI_0360/HI_0361/HI_0362 for iron. Metal-binding component (Potential) [H]
COG id: COG0803
COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface adhesin
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 9 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006127 - InterPro: IPR006129 - InterPro: IPR006128 [H]
Pfam domain/function: PF01297 SBP_bac_9 [H]
EC number: NA
Molecular weight: Translated: 35097; Mature: 34966
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNEGASSSGSLVRRSVLRRLVFWAAAFVSVSLFTTACLAKSEDKTVKPVVYTSFGVLES CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH ITKSIAGDKLTVRSIVPQGGSVHEYEPKPSDVKDLANAKMLIVNGLHLEDEWLDKVLVDF HHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHH KGVKVTASKGIAPILIAEDRSSGTPNPHAWVSPKDGAIYAKNITEFLSELDPKNKAYYQE CCEEEECCCCCEEEEEECCCCCCCCCCCCEECCCCCEEEHHHHHHHHHHCCCCCCHHHHH HGGALEKRLQSLSEEFEKSIAKIPAAYRALVTCEGAFSYVAQAGGLEERYLWPVNGENAE HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCH TSKKVGELVDFVKGRKLPYVFCEYGVNTKFIEQVIHDSGGIAKLGGLFYVDGLVDKDGHA HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHCCEEEECCEECCCCCE ITYEQAIEQNIKVISETLGSSR EEHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SNEGASSSGSLVRRSVLRRLVFWAAAFVSVSLFTTACLAKSEDKTVKPVVYTSFGVLES CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH ITKSIAGDKLTVRSIVPQGGSVHEYEPKPSDVKDLANAKMLIVNGLHLEDEWLDKVLVDF HHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHH KGVKVTASKGIAPILIAEDRSSGTPNPHAWVSPKDGAIYAKNITEFLSELDPKNKAYYQE CCEEEECCCCCEEEEEECCCCCCCCCCCCEECCCCCEEEHHHHHHHHHHCCCCCCHHHHH HGGALEKRLQSLSEEFEKSIAKIPAAYRALVTCEGAFSYVAQAGGLEERYLWPVNGENAE HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCH TSKKVGELVDFVKGRKLPYVFCEYGVNTKFIEQVIHDSGGIAKLGGLFYVDGLVDKDGHA HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHCCEEEECCEECCCCCE ITYEQAIEQNIKVISETLGSSR EEHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Zn (II) [Periplasm]; H2O; ATP [C]
Specific reaction: Zn (II) [Periplasm] + H2O + ATP = Zn (II) [Cytoplasm] + ADP + phosphate [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 1556062; 10675023 [H]