| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572770
Identifier: 28572770
GI number: 28572770
Start: 709750
End: 710373
Strand: Reverse
Name: 28572770
Synonym: TW624
Alternate gene names: NA
Gene position: 710373-709750 (Counterclockwise)
Preceding gene: 28572771
Following gene: 28572769
Centisome position: 76.72
GC content: 51.44
Gene sequence:
>624_bases GTGCGCTGTTTCAAACCCCCCAAAACAGAAAACAAAACAGAAGGGGGGGGATTGCCAACATCGCCTAACCCTCTCTCTTA CCTCACCAAAGCCTTTACCTTACTATTAACCCTTCTCCTCCTATCATCTATCTCTCCCGTATCTGCCAGACAGGCTACTG AGTGTATCCCCACCATCGGTTGTTACAATACGGGTAGTGGGCATGTATGTACTGCGATGGGTATAGATCTCCCAGGATGT CCATCCAGAACACCGGCCAATATAGCGTCTGCAAATGCTAAGGCGCAACAGCATCGTGCATTACTCAATCCCGGATCGAC CACCTCACCAAAGCAGCCCTCATCCACTGCTGCAAATACTCAGGTAACCCAGCCTGCTACTCAGGCAACCCCATCAGTAC AGTCCCCTGCCGCAGCCACACATTCATCCTCTACCCAGACCCCTTCTGCCGAAACCAGACCTGTAGCTCCATCGGCACCT GCACCTGCTGCTCCACCATCACAGCAACCTGATAACAAATCGACCGAGACAAAAACCCACCTACCATGGTGGTTAGTGAT GATCACTGGATTATCAGGTCTATTACTAGGATCTGGACTGGCTGCCCTCCCCTTCCTCTTATAA
Upstream 100 bases:
>100_bases GAATATGCTAGAATTGCAACACACTGATAGATCTTACAGACGTGGGTTGTTATGAGTGCGAGGGGTGTAATTATGGTTAA GGTGGTAGCTAGATGCATGT
Downstream 100 bases:
>100_bases AGAGAGATACAGTTGTGGCTCCGACCGGTATCGATCCGGTGACCTTTCGATTTTCAGTCGAACGCTCTACCAACTGAGCT ACAGAGCCATGAGCGACCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 207; Mature: 207
Protein sequence:
>207_residues MRCFKPPKTENKTEGGGLPTSPNPLSYLTKAFTLLLTLLLLSSISPVSARQATECIPTIGCYNTGSGHVCTAMGIDLPGC PSRTPANIASANAKAQQHRALLNPGSTTSPKQPSSTAANTQVTQPATQATPSVQSPAAATHSSSTQTPSAETRPVAPSAP APAAPPSQQPDNKSTETKTHLPWWLVMITGLSGLLLGSGLAALPFLL
Sequences:
>Translated_207_residues MRCFKPPKTENKTEGGGLPTSPNPLSYLTKAFTLLLTLLLLSSISPVSARQATECIPTIGCYNTGSGHVCTAMGIDLPGC PSRTPANIASANAKAQQHRALLNPGSTTSPKQPSSTAANTQVTQPATQATPSVQSPAAATHSSSTQTPSAETRPVAPSAP APAAPPSQQPDNKSTETKTHLPWWLVMITGLSGLLLGSGLAALPFLL >Mature_207_residues MRCFKPPKTENKTEGGGLPTSPNPLSYLTKAFTLLLTLLLLSSISPVSARQATECIPTIGCYNTGSGHVCTAMGIDLPGC PSRTPANIASANAKAQQHRALLNPGSTTSPKQPSSTAANTQVTQPATQATPSVQSPAAATHSSSTQTPSAETRPVAPSAP APAAPPSQQPDNKSTETKTHLPWWLVMITGLSGLLLGSGLAALPFLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21259; Mature: 21259
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRCFKPPKTENKTEGGGLPTSPNPLSYLTKAFTLLLTLLLLSSISPVSARQATECIPTIG CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC CYNTGSGHVCTAMGIDLPGCPSRTPANIASANAKAQQHRALLNPGSTTSPKQPSSTAANT CCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC QVTQPATQATPSVQSPAAATHSSSTQTPSAETRPVAPSAPAPAAPPSQQPDNKSTETKTH CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LPWWLVMITGLSGLLLGSGLAALPFLL CHHHHHHHHHHHHHHHHCCHHHHHHCC >Mature Secondary Structure MRCFKPPKTENKTEGGGLPTSPNPLSYLTKAFTLLLTLLLLSSISPVSARQATECIPTIG CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC CYNTGSGHVCTAMGIDLPGCPSRTPANIASANAKAQQHRALLNPGSTTSPKQPSSTAANT CCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC QVTQPATQATPSVQSPAAATHSSSTQTPSAETRPVAPSAPAPAAPPSQQPDNKSTETKTH CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LPWWLVMITGLSGLLLGSGLAALPFLL CHHHHHHHHHHHHHHHHCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA