| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572758
Identifier: 28572758
GI number: 28572758
Start: 694956
End: 697502
Strand: Reverse
Name: 28572758
Synonym: TW612
Alternate gene names: NA
Gene position: 697502-694956 (Counterclockwise)
Preceding gene: 28572759
Following gene: 28572757
Centisome position: 75.33
GC content: 43.89
Gene sequence:
>2547_bases TTGAAAGAAACATGTGTTATTGTCCTTGACTGCTATGACAAGCAGAATATCGAGGAAACTATATCGTCTCTTGAAGCAAT TGGTAATTCTAGTGATGTATATCTTGTTTCACCCTCTGGCACTAGTATTCCAGGTATAAAAACCCTGAAAGGCTCGCAAG TTCAGGTAATTAATTCCTTTATACACAAAAAACAATATGAGTTTTACGCGTTTATAACGGCCGGCAGCTTCCCTGCACAA GATTGGCTCGATTGTGCATTAAAATCCTTCGACAACCGAACGGGTGTTGTTGCGTCAAGGATTGATATAAAAAATCCTCT TACCACTGAAGTTGCAGAATCAAAGACCTGCGTGTTACCTGATGCATCGTCTTCACATAATCACATATTACGAAGCCCAG GGTCAGCACAGACCAGCGCGTTATGCCCTTGTCGGTATGATTTTTCGTATACGGGTGGCGTATTCGAGTGGCTTAAGACA TTTTTATCCGGCAAACTGTGTGCACGAAATAATTGCAGAGAGGTTTTTTTTGGGTCATTTGCCGGACTTGTAATGCGCGG CGATGCATTTATTCAGGCAAAAGGCTTTGACTTTGAGGGGCCAATATCTGATATTGACCTGTTTTGGAGAATAAATCTTC TGGGCTGGAAAGTTGCTTACGAGGAGAACAGCAGAGTTGCACTTTCCCTCATTAACTTCATTAACAATGAACGTGAATTA GCTCTTAATTCGCCGGTTTATTCCTCAATTGCAGGACCCATAAGGGCGAAAGCATCAAATGCTCTTTGTGTAATATACAA GAATTTGGCAAGCGAAACCATGCATACAGGGTTTATTCCAGCGATGCATTTGCTTTCTGTTTTGGCTGAAGTAGATACCC TTCCGCGGTCAGAATCAGCAATGCCCCCGCGCTTACAGTGTGAACATGAACAACTATCAACACACGCAGCACGGAAGCAT GACGCCCATGCTGTTCATGCCAGCGAGTCTCTATCAGGCAAATGCGATGCGGTCTTTCTAAAAACACCTGTAAATTCCTT TGTTGACAATATTGTCGCCATTGAACGTAAAAGACAAGAAGTGCAAAAGACCCGGGTAATTCCAGACCACAATCTTTTTC GACTTATTCAGGTATCGCAAGAACATAGTGCGGTGTTGAAGGTTTTTGGATCTGAGGTGATTCGCCGCACGCGGGTTCTT GTCATAACACCTGACAGGGTCGGGAGATCTATGGCTGGTCCCGCTATCAGGGCTTGGAATATCTCAGAGGTTCTCTCGAG ATTATATGAAGTGCGGCTTGTGTCAAGCGTACCTTCGGAGTCTCTCGATGCACCCTTTGAGATTTTCTATATCGGTAATA ATCAGAGGCAAATGGCTATTCATGAAAAATGGGCAGATGTAATAGTTTTCCAGGGCCATATCCTTTCGCAATTTCCGTTG CTTAGAAGAACAAAAAAGTTCCTGATTGCTGATGTGTATGACCCAATGCATTTAGAGCAACTTGAGCAGGCAAAAAATTC TCCAATTGAAGTTTGGCGCGCTCAGTTTGAAGGCGCTGCAAGCGCCCTTGAGCAGCAGTTTCTTTTGGCAGATTATTTTG TCTGCGCTTCAGAAAGGCAGCGCCACTTCTATCTTGGCCAACTTATGAGCGCTGGGAAAGTGTCTGTTGAGCATTATCAG GAAGATCCACATCTGCGAAATCTAATTGATGTTGTTCCATTTGGATTAAGTTCAGTCTCTCCAAAGAAAACACGTGTATG CCTGCGGGGGGTTTATCCTGGCATCGCCGAAAACGACAAAATACTTATTTGGGCCGGTGGAATATACAACTGGTTTGATA CCGAGACTCTCATAATGGCTGTTGCAGATCTGAGTCAGCGCCGAGATTCCGTCCGGCTATTTTTCCAAGGGACGAAGCAT CCAAATCCTGCTGTTCCGGAAATGAGTGTTGTTGCCCAATCCCGTAGTCTTGCGCAAGCTTGCAATATTTTGGATAAATA TGTTTTTTTCAATGACACTTGGGTTGATTACGATGATAGGCAGAACTATCTTTTGGAGTCAGATGCGGGGGTAACCACTC ATTTCGACCACGTTGAAACGACTTTTTCCTTCAGAACCAGAGTGTTGGATTATCTATGGGCCGGCCTTCCAATGGTCATT ACAGATGGAGATGTATTTGCCCAGTATGTCAAAGAGTACAATCTCGGCTTAGTTGTTGAGCAAGGGAACGTGCGTTCCCT TGCTGATGCCTTGGAAAAGATTCTTTTTGATCAAGACTTTATTCTTGCCTGTAAGAGAAATATAGAGGAGTTTAGACGTC GATTTTTTTGGGAGGAAGTTTTAAGACCGCTTATCAGGAGAATTGATGTGCCACATACCTTTAAGGTTGATACGCGTACA AAGCGTGACAGAAAGCGCATTGACAATATGCCTTGGGGGAGTAGGCGTAACCTGGCCCTTGTGCGTTACTACTACAGAGC TGGTGGAGTCAAGATGGTCTTTCGCAAAATTGTAGACAGGATTAGATTTTTATTTGGGAGTAGATAG
Upstream 100 bases:
>100_bases ACCGCGGGTCTTTGCCTTGTGCGCGCAAGCTCACCGATTGCCTGTAATATCGACTCGACGACCTTATGTAAGCCGCGTAC TCCAGGGCCGGGGCTGTGAT
Downstream 100 bases:
>100_bases GGTGTTTTTCTGGTTTACTTTTGCTTTATACATACTGTGTGGGTTTTGTATTTTTTTTACTCTTATTTCCGGCCTGCTTC GCTATAGGCCGGCTGATTTG
Product: hypothetical protein
Products: NA
Alternate protein names: Group 1 Glycosyl Transferase; Glycosyltransferase; Diverged Glycosyltransferase Domain-Containing Protein; Glycosyl Transferase Family Protein; Family 2 Glycosyl Transferase
Number of amino acids: Translated: 848; Mature: 848
Protein sequence:
>848_residues MKETCVIVLDCYDKQNIEETISSLEAIGNSSDVYLVSPSGTSIPGIKTLKGSQVQVINSFIHKKQYEFYAFITAGSFPAQ DWLDCALKSFDNRTGVVASRIDIKNPLTTEVAESKTCVLPDASSSHNHILRSPGSAQTSALCPCRYDFSYTGGVFEWLKT FLSGKLCARNNCREVFFGSFAGLVMRGDAFIQAKGFDFEGPISDIDLFWRINLLGWKVAYEENSRVALSLINFINNEREL ALNSPVYSSIAGPIRAKASNALCVIYKNLASETMHTGFIPAMHLLSVLAEVDTLPRSESAMPPRLQCEHEQLSTHAARKH DAHAVHASESLSGKCDAVFLKTPVNSFVDNIVAIERKRQEVQKTRVIPDHNLFRLIQVSQEHSAVLKVFGSEVIRRTRVL VITPDRVGRSMAGPAIRAWNISEVLSRLYEVRLVSSVPSESLDAPFEIFYIGNNQRQMAIHEKWADVIVFQGHILSQFPL LRRTKKFLIADVYDPMHLEQLEQAKNSPIEVWRAQFEGAASALEQQFLLADYFVCASERQRHFYLGQLMSAGKVSVEHYQ EDPHLRNLIDVVPFGLSSVSPKKTRVCLRGVYPGIAENDKILIWAGGIYNWFDTETLIMAVADLSQRRDSVRLFFQGTKH PNPAVPEMSVVAQSRSLAQACNILDKYVFFNDTWVDYDDRQNYLLESDAGVTTHFDHVETTFSFRTRVLDYLWAGLPMVI TDGDVFAQYVKEYNLGLVVEQGNVRSLADALEKILFDQDFILACKRNIEEFRRRFFWEEVLRPLIRRIDVPHTFKVDTRT KRDRKRIDNMPWGSRRNLALVRYYYRAGGVKMVFRKIVDRIRFLFGSR
Sequences:
>Translated_848_residues MKETCVIVLDCYDKQNIEETISSLEAIGNSSDVYLVSPSGTSIPGIKTLKGSQVQVINSFIHKKQYEFYAFITAGSFPAQ DWLDCALKSFDNRTGVVASRIDIKNPLTTEVAESKTCVLPDASSSHNHILRSPGSAQTSALCPCRYDFSYTGGVFEWLKT FLSGKLCARNNCREVFFGSFAGLVMRGDAFIQAKGFDFEGPISDIDLFWRINLLGWKVAYEENSRVALSLINFINNEREL ALNSPVYSSIAGPIRAKASNALCVIYKNLASETMHTGFIPAMHLLSVLAEVDTLPRSESAMPPRLQCEHEQLSTHAARKH DAHAVHASESLSGKCDAVFLKTPVNSFVDNIVAIERKRQEVQKTRVIPDHNLFRLIQVSQEHSAVLKVFGSEVIRRTRVL VITPDRVGRSMAGPAIRAWNISEVLSRLYEVRLVSSVPSESLDAPFEIFYIGNNQRQMAIHEKWADVIVFQGHILSQFPL LRRTKKFLIADVYDPMHLEQLEQAKNSPIEVWRAQFEGAASALEQQFLLADYFVCASERQRHFYLGQLMSAGKVSVEHYQ EDPHLRNLIDVVPFGLSSVSPKKTRVCLRGVYPGIAENDKILIWAGGIYNWFDTETLIMAVADLSQRRDSVRLFFQGTKH PNPAVPEMSVVAQSRSLAQACNILDKYVFFNDTWVDYDDRQNYLLESDAGVTTHFDHVETTFSFRTRVLDYLWAGLPMVI TDGDVFAQYVKEYNLGLVVEQGNVRSLADALEKILFDQDFILACKRNIEEFRRRFFWEEVLRPLIRRIDVPHTFKVDTRT KRDRKRIDNMPWGSRRNLALVRYYYRAGGVKMVFRKIVDRIRFLFGSR >Mature_848_residues MKETCVIVLDCYDKQNIEETISSLEAIGNSSDVYLVSPSGTSIPGIKTLKGSQVQVINSFIHKKQYEFYAFITAGSFPAQ DWLDCALKSFDNRTGVVASRIDIKNPLTTEVAESKTCVLPDASSSHNHILRSPGSAQTSALCPCRYDFSYTGGVFEWLKT FLSGKLCARNNCREVFFGSFAGLVMRGDAFIQAKGFDFEGPISDIDLFWRINLLGWKVAYEENSRVALSLINFINNEREL ALNSPVYSSIAGPIRAKASNALCVIYKNLASETMHTGFIPAMHLLSVLAEVDTLPRSESAMPPRLQCEHEQLSTHAARKH DAHAVHASESLSGKCDAVFLKTPVNSFVDNIVAIERKRQEVQKTRVIPDHNLFRLIQVSQEHSAVLKVFGSEVIRRTRVL VITPDRVGRSMAGPAIRAWNISEVLSRLYEVRLVSSVPSESLDAPFEIFYIGNNQRQMAIHEKWADVIVFQGHILSQFPL LRRTKKFLIADVYDPMHLEQLEQAKNSPIEVWRAQFEGAASALEQQFLLADYFVCASERQRHFYLGQLMSAGKVSVEHYQ EDPHLRNLIDVVPFGLSSVSPKKTRVCLRGVYPGIAENDKILIWAGGIYNWFDTETLIMAVADLSQRRDSVRLFFQGTKH PNPAVPEMSVVAQSRSLAQACNILDKYVFFNDTWVDYDDRQNYLLESDAGVTTHFDHVETTFSFRTRVLDYLWAGLPMVI TDGDVFAQYVKEYNLGLVVEQGNVRSLADALEKILFDQDFILACKRNIEEFRRRFFWEEVLRPLIRRIDVPHTFKVDTRT KRDRKRIDNMPWGSRRNLALVRYYYRAGGVKMVFRKIVDRIRFLFGSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 96405; Mature: 96405
Theoretical pI: Translated: 8.07; Mature: 8.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKETCVIVLDCYDKQNIEETISSLEAIGNSSDVYLVSPSGTSIPGIKTLKGSQVQVINSF CCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHH IHKKQYEFYAFITAGSFPAQDWLDCALKSFDNRTGVVASRIDIKNPLTTEVAESKTCVLP HHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCEEECC DASSSHNHILRSPGSAQTSALCPCRYDFSYTGGVFEWLKTFLSGKLCARNNCREVFFGSF CCCCCCCCEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH AGLVMRGDAFIQAKGFDFEGPISDIDLFWRINLLGWKVAYEENSRVALSLINFINNEREL HHHEEECCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCHHHHHHHHHCCCCEE ALNSPVYSSIAGPIRAKASNALCVIYKNLASETMHTGFIPAMHLLSVLAEVDTLPRSESA EECCCHHHHHCCCHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC MPPRLQCEHEQLSTHAARKHDAHAVHASESLSGKCDAVFLKTPVNSFVDNIVAIERKRQE CCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH VQKTRVIPDHNLFRLIQVSQEHSAVLKVFGSEVIRRTRVLVITPDRVGRSMAGPAIRAWN HHHHCCCCCCCCEEHEEECHHHHHHHHHHHHHHHHHCEEEEECCHHHCCCCCCCCEEECC ISEVLSRLYEVRLVSSVPSESLDAPFEIFYIGNNQRQMAIHEKWADVIVFQGHILSQFPL HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCEEEECCCHHHHCHH LRRTKKFLIADVYDPMHLEQLEQAKNSPIEVWRAQFEGAASALEQQFLLADYFVCASERQ HHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RHFYLGQLMSAGKVSVEHYQEDPHLRNLIDVVPFGLSSVSPKKTRVCLRGVYPGIAENDK CHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCE ILIWAGGIYNWFDTETLIMAVADLSQRRDSVRLFFQGTKHPNPAVPEMSVVAQSRSLAQA EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH CNILDKYVFFNDTWVDYDDRQNYLLESDAGVTTHFDHVETTFSFRTRVLDYLWAGLPMVI HHHHHHHHEECCCEECCCCCCCEEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCEEE TDGDVFAQYVKEYNLGLVVEQGNVRSLADALEKILFDQDFILACKRNIEEFRRRFFWEEV ECHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LRPLIRRIDVPHTFKVDTRTKRDRKRIDNMPWGSRRNLALVRYYYRAGGVKMVFRKIVDR HHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEEEEHHCCCHHHHHHHHHHH IRFLFGSR HHHHHCCC >Mature Secondary Structure MKETCVIVLDCYDKQNIEETISSLEAIGNSSDVYLVSPSGTSIPGIKTLKGSQVQVINSF CCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHH IHKKQYEFYAFITAGSFPAQDWLDCALKSFDNRTGVVASRIDIKNPLTTEVAESKTCVLP HHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCEEECC DASSSHNHILRSPGSAQTSALCPCRYDFSYTGGVFEWLKTFLSGKLCARNNCREVFFGSF CCCCCCCCEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH AGLVMRGDAFIQAKGFDFEGPISDIDLFWRINLLGWKVAYEENSRVALSLINFINNEREL HHHEEECCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCHHHHHHHHHCCCCEE ALNSPVYSSIAGPIRAKASNALCVIYKNLASETMHTGFIPAMHLLSVLAEVDTLPRSESA EECCCHHHHHCCCHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC MPPRLQCEHEQLSTHAARKHDAHAVHASESLSGKCDAVFLKTPVNSFVDNIVAIERKRQE CCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH VQKTRVIPDHNLFRLIQVSQEHSAVLKVFGSEVIRRTRVLVITPDRVGRSMAGPAIRAWN HHHHCCCCCCCCEEHEEECHHHHHHHHHHHHHHHHHCEEEEECCHHHCCCCCCCCEEECC ISEVLSRLYEVRLVSSVPSESLDAPFEIFYIGNNQRQMAIHEKWADVIVFQGHILSQFPL HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCEEEECCCHHHHCHH LRRTKKFLIADVYDPMHLEQLEQAKNSPIEVWRAQFEGAASALEQQFLLADYFVCASERQ HHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RHFYLGQLMSAGKVSVEHYQEDPHLRNLIDVVPFGLSSVSPKKTRVCLRGVYPGIAENDK CHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCE ILIWAGGIYNWFDTETLIMAVADLSQRRDSVRLFFQGTKHPNPAVPEMSVVAQSRSLAQA EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH CNILDKYVFFNDTWVDYDDRQNYLLESDAGVTTHFDHVETTFSFRTRVLDYLWAGLPMVI HHHHHHHHEECCCEECCCCCCCEEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCEEE TDGDVFAQYVKEYNLGLVVEQGNVRSLADALEKILFDQDFILACKRNIEEFRRRFFWEEV ECHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LRPLIRRIDVPHTFKVDTRTKRDRKRIDNMPWGSRRNLALVRYYYRAGGVKMVFRKIVDR HHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEEEEHHCCCHHHHHHHHHHH IRFLFGSR HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA