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The map label for this gene is rbfA

Identifier: 28572759

GI number: 28572759

Start: 697504

End: 698094

Strand: Reverse

Name: rbfA

Synonym: TW613

Alternate gene names: 28572759

Gene position: 698094-697504 (Counterclockwise)

Preceding gene: 28572760

Following gene: 28572758

Centisome position: 75.39

GC content: 48.56

Gene sequence:

>591_bases
GTGGACCGTGTTAAAGAATTTGCTATGAAGGATCAAATTCGCGCCCACAGGATGGCAGGCAGAATTCGTCATCTCATCTC
CAGACAAATTGAAACGAAGCTGCGTGATCAGTTGGGTTTAGTTACTATAACTGAAGTGCAGGTAACAGGGGATTTGCATC
ACGCCAAAGTATTTGTCACTGTGTATGGCACGAAAGATGAAGCACAAACGGCCCTCAAGATTTTAGAGGATAACAGGGCT
AACTTTCGCAGGTCACTTGGGGTTTTAAAGGTTAGATTCGTACCAACAGTTGAGTTTGAACTTGATCGCTTATTTGAAGA
TGCTGGGATTATGGATGAACTGATTCAGCGCGCGCGTGAGTCGGATAAGCGCATAGCTGCGGGTGCTTCAGGGCCAATTG
ATAATGATGCAACCGCCCTAATGGATAAAGTTGTAGATCAGGAGGCACGTAATCCCGATTCATGGCATACTGCGCCCACA
TCTTCATCGCACACCGCGGGTCTTTGCCTTGTGCGCGCAAGCTCACCGATTGCCTGTAATATCGACTCGACGACCTTATG
TAAGCCGCGTACTCCAGGGCCGGGGCTGTGA

Upstream 100 bases:

>100_bases
TACGCTGCAGTTGTTACGGGCACTGACTGCACGTTAACTTCATCTGGTACATTTTGACAGTCAGATTATTCTTAGGGTTT
TTCTAAAAGACTTGTGAAAT

Downstream 100 bases:

>100_bases
TTTGAAAGAAACATGTGTTATTGTCCTTGACTGCTATGACAAGCAGAATATCGAGGAAACTATATCGTCTCTTGAAGCAA
TTGGTAATTCTAGTGATGTA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MDRVKEFAMKDQIRAHRMAGRIRHLISRQIETKLRDQLGLVTITEVQVTGDLHHAKVFVTVYGTKDEAQTALKILEDNRA
NFRRSLGVLKVRFVPTVEFELDRLFEDAGIMDELIQRARESDKRIAAGASGPIDNDATALMDKVVDQEARNPDSWHTAPT
SSSHTAGLCLVRASSPIACNIDSTTLCKPRTPGPGL

Sequences:

>Translated_196_residues
MDRVKEFAMKDQIRAHRMAGRIRHLISRQIETKLRDQLGLVTITEVQVTGDLHHAKVFVTVYGTKDEAQTALKILEDNRA
NFRRSLGVLKVRFVPTVEFELDRLFEDAGIMDELIQRARESDKRIAAGASGPIDNDATALMDKVVDQEARNPDSWHTAPT
SSSHTAGLCLVRASSPIACNIDSTTLCKPRTPGPGL
>Mature_196_residues
MDRVKEFAMKDQIRAHRMAGRIRHLISRQIETKLRDQLGLVTITEVQVTGDLHHAKVFVTVYGTKDEAQTALKILEDNRA
NFRRSLGVLKVRFVPTVEFELDRLFEDAGIMDELIQRARESDKRIAAGASGPIDNDATALMDKVVDQEARNPDSWHTAPT
SSSHTAGLCLVRASSPIACNIDSTTLCKPRTPGPGL

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_TROW8 (Q83ND3)

Other databases:

- EMBL:   BX251412
- RefSeq:   NP_789539.1
- ProteinModelPortal:   Q83ND3
- STRING:   Q83ND3
- GeneID:   1064818
- GenomeReviews:   BX072543_GR
- KEGG:   tws:TW613
- eggNOG:   COG0858
- HOGENOM:   HBG732604
- OMA:   GHAKIFM
- ProtClustDB:   CLSK230092
- BioCyc:   TWHI218496:TW0584-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 21760; Mature: 21760

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRVKEFAMKDQIRAHRMAGRIRHLISRQIETKLRDQLGLVTITEVQVTGDLHHAKVFVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEEEE
VYGTKDEAQTALKILEDNRANFRRSLGVLKVRFVPTVEFELDRLFEDAGIMDELIQRARE
EECCCHHHHHHHHHHHCCHHHHHHHCCEEEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHH
SDKRIAAGASGPIDNDATALMDKVVDQEARNPDSWHTAPTSSSHTAGLCLVRASSPIACN
CCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE
IDSTTLCKPRTPGPGL
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDRVKEFAMKDQIRAHRMAGRIRHLISRQIETKLRDQLGLVTITEVQVTGDLHHAKVFVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEEEE
VYGTKDEAQTALKILEDNRANFRRSLGVLKVRFVPTVEFELDRLFEDAGIMDELIQRARE
EECCCHHHHHHHHHHHCCHHHHHHHCCEEEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHH
SDKRIAAGASGPIDNDATALMDKVVDQEARNPDSWHTAPTSSSHTAGLCLVRASSPIACN
CCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE
IDSTTLCKPRTPGPGL
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12606174