The gene/protein map for NC_004551 is currently unavailable.
Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572723

Identifier: 28572723

GI number: 28572723

Start: 628384

End: 629523

Strand: Direct

Name: 28572723

Synonym: TW575

Alternate gene names: NA

Gene position: 628384-629523 (Clockwise)

Preceding gene: 28572703

Following gene: 28572732

Centisome position: 67.86

GC content: 49.56

Gene sequence:

>1140_bases
GTGGAGGGTGGCCTTCTTCCCTCGGTTGCGCTTATAGCCGCGCATGAGAGCTCCTCCAGTGCTCTTGCGGGTCTTGCTGT
TTCAGCTGGCCTGATTGGGTATCTTGCGAGTAATATACCTGGCGGTATTGTCGTAAGCAGATTCGGCGAGCTGCGCGGCA
TGATGATTGCGCTGAGCTGCGCGGGAATCAGTGTGCTTATAAATATCTTCTCTACAAGTGTTGCGCTGCTTACATTTGGG
GTGTTTCTGAGTGGTTTTTCCTTTGGTGCGTATGGTGTTGCACGGCACTCCTTTATGACTCTTTATACTCCTTTGAAGGT
CAGGGCACGGGCATTCTCAGTGCTCGGCGGAGCGTTCAGGCTCGGCGGAGCGTTGGGTACGTTTCTTGTGTCAGGTGTTG
TTGTTCTGACAGGAAATGTGCGAAGCGTGTTTGTTGTGCATCTTGCTATTGTTATTCTCTTGGTCATTTTTCTGTTCCTG
GTGCGGAATGTGCAGAAAACTGATAAGTCACCCAAAATGCTTGCAGAGCAGCCAAACAGTATAAAAGCTATGTGGGAAGC
TGTTCAGTCTAAAAAGGGCCAGTTGATTACAATTGGTTCTGCCGCTGGAATACTTGCTGCGGCGAGGGTTAGCAGGTCGG
TTATTCTGCCGCTGGTTGGATTACACGTTGGCCTTAAGCCGGAACAAATTACATTCATAATAGGTATTGGGTCAACCCTT
GAGGCGTTTCTGTTCTATTCTTCTGGATATGTAATGGATAAGTGGGGGCGGGTGTGGTCCGCTGCGCCAGCATTGTTTAT
GGTTGGTGGGGCCTATCTCCTCGTTTTCTTTGCCGAAAGTTATGTGGCTTTCTTGGCTATTAGCCTGTTGATGGGAATTG
GTAACGCTCTTGGAAGTGGGATTATCCTAACCCTTGGGGCTGACCTTGCTGGAACATCTGATCAGACCGCATTTATAAGT
GTGTGGCGTCTTGTAACCGATATTGGGCAGAGTGTTGGTCCGCTCGGTATGTCAACCCTATTGGGAATTACAAGTCTTAC
CGGCGCGGCTGGGGTTATGGGTCTGACCTGCTTTGCTGCGGCTGGGATTATGATACGCTACCTGCACATTTACCTGCCCA
ATAAACGAGCTAAAACCTAA

Upstream 100 bases:

>100_bases
GCTATTTTGCAAAAACAGTGAGAAACGAAAGGTAAGTAACATAAAACAGCTACTCCCAACAATAATAGTGGTTTTTATCC
CATCGGTTCTATCCTCTATG

Downstream 100 bases:

>100_bases
CATGCACGCGCGACATGTGACATGTACGAGGGTTACAGATCGCGCGTATGGGTAACATGTCGCGCGTGCATAGGTTACGG
GTAACGCACCGCAGGTAACC

Product: integral membrane transport protein

Products: NA

Alternate protein names: MFS Transporter; Facilitator Superfamily Transporter; Facilitator Transporter; MFS Permease; Transporter Protein; Arabinose Efflux Permease Family Protein; Necrosis Inducing; Multidrug Efflux Protein

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MEGGLLPSVALIAAHESSSSALAGLAVSAGLIGYLASNIPGGIVVSRFGELRGMMIALSCAGISVLINIFSTSVALLTFG
VFLSGFSFGAYGVARHSFMTLYTPLKVRARAFSVLGGAFRLGGALGTFLVSGVVVLTGNVRSVFVVHLAIVILLVIFLFL
VRNVQKTDKSPKMLAEQPNSIKAMWEAVQSKKGQLITIGSAAGILAAARVSRSVILPLVGLHVGLKPEQITFIIGIGSTL
EAFLFYSSGYVMDKWGRVWSAAPALFMVGGAYLLVFFAESYVAFLAISLLMGIGNALGSGIILTLGADLAGTSDQTAFIS
VWRLVTDIGQSVGPLGMSTLLGITSLTGAAGVMGLTCFAAAGIMIRYLHIYLPNKRAKT

Sequences:

>Translated_379_residues
MEGGLLPSVALIAAHESSSSALAGLAVSAGLIGYLASNIPGGIVVSRFGELRGMMIALSCAGISVLINIFSTSVALLTFG
VFLSGFSFGAYGVARHSFMTLYTPLKVRARAFSVLGGAFRLGGALGTFLVSGVVVLTGNVRSVFVVHLAIVILLVIFLFL
VRNVQKTDKSPKMLAEQPNSIKAMWEAVQSKKGQLITIGSAAGILAAARVSRSVILPLVGLHVGLKPEQITFIIGIGSTL
EAFLFYSSGYVMDKWGRVWSAAPALFMVGGAYLLVFFAESYVAFLAISLLMGIGNALGSGIILTLGADLAGTSDQTAFIS
VWRLVTDIGQSVGPLGMSTLLGITSLTGAAGVMGLTCFAAAGIMIRYLHIYLPNKRAKT
>Mature_379_residues
MEGGLLPSVALIAAHESSSSALAGLAVSAGLIGYLASNIPGGIVVSRFGELRGMMIALSCAGISVLINIFSTSVALLTFG
VFLSGFSFGAYGVARHSFMTLYTPLKVRARAFSVLGGAFRLGGALGTFLVSGVVVLTGNVRSVFVVHLAIVILLVIFLFL
VRNVQKTDKSPKMLAEQPNSIKAMWEAVQSKKGQLITIGSAAGILAAARVSRSVILPLVGLHVGLKPEQITFIIGIGSTL
EAFLFYSSGYVMDKWGRVWSAAPALFMVGGAYLLVFFAESYVAFLAISLLMGIGNALGSGIILTLGADLAGTSDQTAFIS
VWRLVTDIGQSVGPLGMSTLLGITSLTGAAGVMGLTCFAAAGIMIRYLHIYLPNKRAKT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39463; Mature: 39463

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGGLLPSVALIAAHESSSSALAGLAVSAGLIGYLASNIPGGIVVSRFGELRGMMIALSC
CCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEHH
AGISVLINIFSTSVALLTFGVFLSGFSFGAYGVARHSFMTLYTPLKVRARAFSVLGGAFR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LGGALGTFLVSGVVVLTGNVRSVFVVHLAIVILLVIFLFLVRNVQKTDKSPKMLAEQPNS
HHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHH
IKAMWEAVQSKKGQLITIGSAAGILAAARVSRSVILPLVGLHVGLKPEQITFIIGIGSTL
HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHH
EAFLFYSSGYVMDKWGRVWSAAPALFMVGGAYLLVFFAESYVAFLAISLLMGIGNALGSG
HHHHHHCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IILTLGADLAGTSDQTAFISVWRLVTDIGQSVGPLGMSTLLGITSLTGAAGVMGLTCFAA
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AGIMIRYLHIYLPNKRAKT
HHHHHHHHHHEECCCCCCC
>Mature Secondary Structure
MEGGLLPSVALIAAHESSSSALAGLAVSAGLIGYLASNIPGGIVVSRFGELRGMMIALSC
CCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEHH
AGISVLINIFSTSVALLTFGVFLSGFSFGAYGVARHSFMTLYTPLKVRARAFSVLGGAFR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LGGALGTFLVSGVVVLTGNVRSVFVVHLAIVILLVIFLFLVRNVQKTDKSPKMLAEQPNS
HHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHH
IKAMWEAVQSKKGQLITIGSAAGILAAARVSRSVILPLVGLHVGLKPEQITFIIGIGSTL
HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHH
EAFLFYSSGYVMDKWGRVWSAAPALFMVGGAYLLVFFAESYVAFLAISLLMGIGNALGSG
HHHHHHCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IILTLGADLAGTSDQTAFISVWRLVTDIGQSVGPLGMSTLLGITSLTGAAGVMGLTCFAA
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AGIMIRYLHIYLPNKRAKT
HHHHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA