| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is glnA [H]
Identifier: 28572658
GI number: 28572658
Start: 547499
End: 548923
Strand: Direct
Name: glnA [H]
Synonym: TW509
Alternate gene names: 28572658
Gene position: 547499-548923 (Clockwise)
Preceding gene: 28572644
Following gene: 28572659
Centisome position: 59.13
GC content: 47.65
Gene sequence:
>1425_bases GTGTTTGAAAATGCAAAAGAGGCAGCTGAGTATATAAAATCGAATCAAATTGAAGTGCTTGATGTTCGCTTCTGTGATTT TCTCGGCGCTCAACATCATTTTGCCGTCCCTGCTCACGCAGTGGATGATGAGTTTTTTCAGTCACCCCAGGTCTTTGATG CTTCCTCTCTGAGGGGCTATGCGGATATAAACCATTCAGATATGCTTCTTGTCGCAGATCCATCGACGTCCTATATTGAC CCGTTTAGACACCACAAAACCCTTGCGATGATCTTTGATGTGCACGATCCACGCACGGGGGACGTTTATGAGCGCGACTC ACGTAATGTGGCTAAAAAGGCAGAAAAGTACCTCGCGGGGTGCCGTTTTGCAGATACAGCGTATTTCGCAGCCGAAGCTG AGTTTTTCATCTTTGATGACGTTCGGTTCAAGATCAGCAATCACTCATCATCCTATTCTGTTGATTCAGAGGAAGGTATT TGGAACTCATCACGCAGGAAAGGGGGTGGGAACCTTGGTAATCAGCTCAAACACAAGGGAGGATACGCCCCCCTTCCCCC TGCGGATCAACACGCCGACCTGCGCGATGACATAATGAATGCCCTAACAAAGGTTGGTCTGCGTGTTGAAAAAGGTCATC ATGAAGCTGGCTCCGCGGGTCAAGGTGAGATAAATTACAGATTTAACACACTCGTCAATGCAGCAGATGATTTGCTGAAA TTCAAATATGTCGTCAAAAACACAGCACATGAATGGGGAAAAAGCGCTACCTTTATGCCAAAGCCAATTGCCGGAGACAA TGGGTCCGGGATGCACACTCATCAGTCACTGTGGAAAAATGGAAAACCCCTGTTCTACAGTGAAACCGGGTATGCCAATT TGAGCGATATCGCCCTGTGGTACATAGGTGGCCTGCTAAAACATGGCCCTGCTCTAGCAGCATTTACGAACCCGTCAACG AACTCATACAAGAGACTTGTTGCCGGATTTGAAGCACCAACCAGTCTCGTTTACTCTGCGGGCAACCGTTCGGCTGCTAT CAGGATCCCCCCAACAATCGGAGCTGAAGGCAGTAAAAGAATTGAATACAGAGTGCCGGACTCCTCTTCAAATCCATATC TCGCGTTTTCTGCCTTGCTTATGGCAGGAATAGACGGAATAAAGAATAAAATACACCCGGGCAGCCCGGTTGAGCAGAAT ATGTACGAGCTCACAAAGGAGCAGTCAAGGGACCTGCGATATCTACCAAGCTCACTCAGCGATGCACTGCGTGCTCTTGA GCAAGACTGTGATTTCCTCCTTGAGGGGAATGTATTCACCCGTGAATTCATTAGCGCATGGATTGATTACAAGAGGAAGA ATGAGCTTAACCGGATTGCGCAGTATCCTCATCCACTTGAATTTGGGATGTATTATGGGGTGTGA
Upstream 100 bases:
>100_bases GGACATATGAGGCCGTAACAGTGACAATCAAAAATAACAAACGTGTACAATACACAGGTGTGCACGCAAGGCGCGTGTGG GACGTGGTCAGAGGTGCTGT
Downstream 100 bases:
>100_bases TCTGTATGTCACGCAAACCTTCTCCAACCAGACGAACAAGGATACATCGCTTTCATAAAGGTTCCTGCGGCAGGAAGCTG GTGGGTCTTACATGTTATGA
Product: glutamine synthetase
Products: NA
Alternate protein names: Glutamate--ammonia ligase I; Glutamine synthetase I; GSI [H]
Number of amino acids: Translated: 474; Mature: 474
Protein sequence:
>474_residues MFENAKEAAEYIKSNQIEVLDVRFCDFLGAQHHFAVPAHAVDDEFFQSPQVFDASSLRGYADINHSDMLLVADPSTSYID PFRHHKTLAMIFDVHDPRTGDVYERDSRNVAKKAEKYLAGCRFADTAYFAAEAEFFIFDDVRFKISNHSSSYSVDSEEGI WNSSRRKGGGNLGNQLKHKGGYAPLPPADQHADLRDDIMNALTKVGLRVEKGHHEAGSAGQGEINYRFNTLVNAADDLLK FKYVVKNTAHEWGKSATFMPKPIAGDNGSGMHTHQSLWKNGKPLFYSETGYANLSDIALWYIGGLLKHGPALAAFTNPST NSYKRLVAGFEAPTSLVYSAGNRSAAIRIPPTIGAEGSKRIEYRVPDSSSNPYLAFSALLMAGIDGIKNKIHPGSPVEQN MYELTKEQSRDLRYLPSSLSDALRALEQDCDFLLEGNVFTREFISAWIDYKRKNELNRIAQYPHPLEFGMYYGV
Sequences:
>Translated_474_residues MFENAKEAAEYIKSNQIEVLDVRFCDFLGAQHHFAVPAHAVDDEFFQSPQVFDASSLRGYADINHSDMLLVADPSTSYID PFRHHKTLAMIFDVHDPRTGDVYERDSRNVAKKAEKYLAGCRFADTAYFAAEAEFFIFDDVRFKISNHSSSYSVDSEEGI WNSSRRKGGGNLGNQLKHKGGYAPLPPADQHADLRDDIMNALTKVGLRVEKGHHEAGSAGQGEINYRFNTLVNAADDLLK FKYVVKNTAHEWGKSATFMPKPIAGDNGSGMHTHQSLWKNGKPLFYSETGYANLSDIALWYIGGLLKHGPALAAFTNPST NSYKRLVAGFEAPTSLVYSAGNRSAAIRIPPTIGAEGSKRIEYRVPDSSSNPYLAFSALLMAGIDGIKNKIHPGSPVEQN MYELTKEQSRDLRYLPSSLSDALRALEQDCDFLLEGNVFTREFISAWIDYKRKNELNRIAQYPHPLEFGMYYGV >Mature_474_residues MFENAKEAAEYIKSNQIEVLDVRFCDFLGAQHHFAVPAHAVDDEFFQSPQVFDASSLRGYADINHSDMLLVADPSTSYID PFRHHKTLAMIFDVHDPRTGDVYERDSRNVAKKAEKYLAGCRFADTAYFAAEAEFFIFDDVRFKISNHSSSYSVDSEEGI WNSSRRKGGGNLGNQLKHKGGYAPLPPADQHADLRDDIMNALTKVGLRVEKGHHEAGSAGQGEINYRFNTLVNAADDLLK FKYVVKNTAHEWGKSATFMPKPIAGDNGSGMHTHQSLWKNGKPLFYSETGYANLSDIALWYIGGLLKHGPALAAFTNPST NSYKRLVAGFEAPTSLVYSAGNRSAAIRIPPTIGAEGSKRIEYRVPDSSSNPYLAFSALLMAGIDGIKNKIHPGSPVEQN MYELTKEQSRDLRYLPSSLSDALRALEQDCDFLLEGNVFTREFISAWIDYKRKNELNRIAQYPHPLEFGMYYGV
Specific function: Unknown
COG id: COG0174
COG function: function code E; Glutamine synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glutamine synthetase family [H]
Homologues:
Organism=Homo sapiens, GI221307485, Length=487, Percent_Identity=23.2032854209446, Blast_Score=87, Evalue=5e-17, Organism=Escherichia coli, GI1790301, Length=471, Percent_Identity=48.8322717622081, Blast_Score=466, Evalue=1e-132, Organism=Escherichia coli, GI87081870, Length=214, Percent_Identity=33.6448598130841, Blast_Score=105, Evalue=5e-24,
Paralogues:
None
Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 15324 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal medi
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008147 - InterPro: IPR014746 - InterPro: IPR008146 - InterPro: IPR004809 - InterPro: IPR001637 [H]
Pfam domain/function: PF00120 Gln-synt_C; PF03951 Gln-synt_N [H]
EC number: =6.3.1.2 [H]
Molecular weight: Translated: 52909; Mature: 52909
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00181 GLNA_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFENAKEAAEYIKSNQIEVLDVRFCDFLGAQHHFAVPAHAVDDEFFQSPQVFDASSLRGY CCCCHHHHHHHHHCCCEEEEEEHHHHHHCCCCCEECCCHHCCHHHHCCCCCCCHHHCCCE ADINHSDMLLVADPSTSYIDPFRHHKTLAMIFDVHDPRTGDVYERDSRNVAKKAEKYLAG ECCCCCCEEEEECCCCCCCCHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHC CRFADTAYFAAEAEFFIFDDVRFKISNHSSSYSVDSEEGIWNSSRRKGGGNLGNQLKHKG CCCCCCCEEEECCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC GYAPLPPADQHADLRDDIMNALTKVGLRVEKGHHEAGSAGQGEINYRFNTLVNAADDLLK CCCCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHH FKYVVKNTAHEWGKSATFMPKPIAGDNGSGMHTHQSLWKNGKPLFYSETGYANLSDIALW HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHH YIGGLLKHGPALAAFTNPSTNSYKRLVAGFEAPTSLVYSAGNRSAAIRIPPTIGAEGSKR HHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCHHHEEECCCCEEEEECCCCCCCCCCCE IEYRVPDSSSNPYLAFSALLMAGIDGIKNKIHPGSPVEQNMYELTKEQSRDLRYLPSSLS EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHCHHHHH DALRALEQDCDFLLEGNVFTREFISAWIDYKRKNELNRIAQYPHPLEFGMYYGV HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MFENAKEAAEYIKSNQIEVLDVRFCDFLGAQHHFAVPAHAVDDEFFQSPQVFDASSLRGY CCCCHHHHHHHHHCCCEEEEEEHHHHHHCCCCCEECCCHHCCHHHHCCCCCCCHHHCCCE ADINHSDMLLVADPSTSYIDPFRHHKTLAMIFDVHDPRTGDVYERDSRNVAKKAEKYLAG ECCCCCCEEEEECCCCCCCCHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHC CRFADTAYFAAEAEFFIFDDVRFKISNHSSSYSVDSEEGIWNSSRRKGGGNLGNQLKHKG CCCCCCCEEEECCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC GYAPLPPADQHADLRDDIMNALTKVGLRVEKGHHEAGSAGQGEINYRFNTLVNAADDLLK CCCCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHH FKYVVKNTAHEWGKSATFMPKPIAGDNGSGMHTHQSLWKNGKPLFYSETGYANLSDIALW HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHH YIGGLLKHGPALAAFTNPSTNSYKRLVAGFEAPTSLVYSAGNRSAAIRIPPTIGAEGSKR HHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCHHHEEECCCCEEEEECCCCCCCCCCCE IEYRVPDSSSNPYLAFSALLMAGIDGIKNKIHPGSPVEQNMYELTKEQSRDLRYLPSSLS EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHCHHHHH DALRALEQDCDFLLEGNVFTREFISAWIDYKRKNELNRIAQYPHPLEFGMYYGV HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8099074 [H]