| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is pyk [H]
Identifier: 28572631
GI number: 28572631
Start: 519320
End: 520735
Strand: Reverse
Name: pyk [H]
Synonym: TW482
Alternate gene names: 28572631
Gene position: 520735-519320 (Counterclockwise)
Preceding gene: 28572632
Following gene: 28572630
Centisome position: 56.24
GC content: 48.38
Gene sequence:
>1416_bases ATGCGTAGGGCCAAGATTGTTGTTACTCTCGGTCCGGCAGTATCAGATCTTGATTCTGTGAGAGATCTTATATCCGCTGG TGCCGACGTCTTTCGCATGAATCTCAGCCACGGATCGTTGGATTTTCACAGGGAGGTATTTCTGAATGTTAGGACGGCTG CTGCTGAGCTAGACAGGCATATTGCTATATTTGCTGATCTTCAGGGTCCAAAAATACGTTTAGGGCGTTTTGCTTCTGGG CCGTATACCCTACAAGAGGGTGATATCTTTACAATCACAACCGAGCAGGTGTTGGGAACGAAAGAGCTTTCCAGCACAAC TTTGCCGACATTACCAGATAATGTCTCAGAGGGGGATTTGCTTTTAATTGATGATGGCAAAGTTGCCCTGAGGGCGATTG GGAATGACGGGGTTCGGATCACTACACGTGTTGAAGTTCCGGGAAAGGTCTCGAATAATAAGGGTATTAACCTTCCGGGT GTTGGAGTTAAAGTTCCGGCCTTATCTGAAAAGGATATTGACTCACTCCGCTGGGCCCTTTCTCTTCCAGTTGATATGAT TGCCTTGAGTTTTGTGCGCTGCGCATCAGATGTGGATGCTGTGCACAAGGTTATGGATGAAGAGGGTATTCGCCTTCCTG TTATTGCAAAGATAGAAAAGCCTCAAGCAGTATCTGCCATAGAGGAGATTGCACTGCGGTTTGATGCGATTATGGTAGCA AGGGGTGATCTTGGGGTTGAACTGCCGCTTGAAGATGTGCCGGTAGCCCAGAAGGAAATTGTTAAGGTTGCACGCAGGTT TGCTCGGCCGGTTATTATCGCAACCCAGATGCTTGAGTCAATGATCTCTTCCTCGCGGCCCACCAGGGCTGAGGCGAGTG ATGTTGCAAACGCTGTTCTTGATGGAGCCGATGCACTGATGCTAAGCGGTGAGACAAGTGTTGGTGAGTGGCCCGTTGAA GCTGTGCGGGTCATGTCGAGGGTTATTGAAAAAACAGAGGAAAAGGCAATTTCACAAATAGTCGGTTTTGGTACAACTCC AAAAACACAGGGTGGTGCCCTCGCCTGGGCCGCAGCAAAGGTTGCTGAGTTTATCGATGCGCGTTATCTGTGTGTCTTTA GTGAAAGTGGAGATTCAATAAGACGGGTGTCGCGACTGCGTCATGATATACCCATTATTGGATTTAGTCCGGTTGAGTCC GTTGTCCGACAGGTCTCTCTCTCTTGGGGTGTTCGATGTTTTTTGATAGAGAGGCTCCATCAGACTGATCAGATGATGCG TAAGGCTGAACATGTTCTCCTCACAAACAATTTGGCCGAGATTGGAGAGAAGATTGTGATTATTTCAGGATCACCAGTTG GGGTGCCGGGGAGTACAAACCATATGAGAATCCACGAGCTTGGAAGCACGTCCTAG
Upstream 100 bases:
>100_bases TTCCGTCCTAAGGAAATGGTTGGGGGTTCGAGTCCCTCCAGGGGCGCGTCGTTTTCTGTTCAGTTACCTGGGTGTTTTTA GAGCGAACTAGTGGTTGTTT
Downstream 100 bases:
>100_bases ATCTATAAAGACTGCTCAAAATACCCGAGTACAAGTGCGTCCGGGGTAAACTAAACAGTTTTCCGACACCTCGTATCTTT GGCGCTTAAATCGAAATGCG
Product: pyruvate kinase
Products: NA
Alternate protein names: PK [H]
Number of amino acids: Translated: 471; Mature: 471
Protein sequence:
>471_residues MRRAKIVVTLGPAVSDLDSVRDLISAGADVFRMNLSHGSLDFHREVFLNVRTAAAELDRHIAIFADLQGPKIRLGRFASG PYTLQEGDIFTITTEQVLGTKELSSTTLPTLPDNVSEGDLLLIDDGKVALRAIGNDGVRITTRVEVPGKVSNNKGINLPG VGVKVPALSEKDIDSLRWALSLPVDMIALSFVRCASDVDAVHKVMDEEGIRLPVIAKIEKPQAVSAIEEIALRFDAIMVA RGDLGVELPLEDVPVAQKEIVKVARRFARPVIIATQMLESMISSSRPTRAEASDVANAVLDGADALMLSGETSVGEWPVE AVRVMSRVIEKTEEKAISQIVGFGTTPKTQGGALAWAAAKVAEFIDARYLCVFSESGDSIRRVSRLRHDIPIIGFSPVES VVRQVSLSWGVRCFLIERLHQTDQMMRKAEHVLLTNNLAEIGEKIVIISGSPVGVPGSTNHMRIHELGSTS
Sequences:
>Translated_471_residues MRRAKIVVTLGPAVSDLDSVRDLISAGADVFRMNLSHGSLDFHREVFLNVRTAAAELDRHIAIFADLQGPKIRLGRFASG PYTLQEGDIFTITTEQVLGTKELSSTTLPTLPDNVSEGDLLLIDDGKVALRAIGNDGVRITTRVEVPGKVSNNKGINLPG VGVKVPALSEKDIDSLRWALSLPVDMIALSFVRCASDVDAVHKVMDEEGIRLPVIAKIEKPQAVSAIEEIALRFDAIMVA RGDLGVELPLEDVPVAQKEIVKVARRFARPVIIATQMLESMISSSRPTRAEASDVANAVLDGADALMLSGETSVGEWPVE AVRVMSRVIEKTEEKAISQIVGFGTTPKTQGGALAWAAAKVAEFIDARYLCVFSESGDSIRRVSRLRHDIPIIGFSPVES VVRQVSLSWGVRCFLIERLHQTDQMMRKAEHVLLTNNLAEIGEKIVIISGSPVGVPGSTNHMRIHELGSTS >Mature_471_residues MRRAKIVVTLGPAVSDLDSVRDLISAGADVFRMNLSHGSLDFHREVFLNVRTAAAELDRHIAIFADLQGPKIRLGRFASG PYTLQEGDIFTITTEQVLGTKELSSTTLPTLPDNVSEGDLLLIDDGKVALRAIGNDGVRITTRVEVPGKVSNNKGINLPG VGVKVPALSEKDIDSLRWALSLPVDMIALSFVRCASDVDAVHKVMDEEGIRLPVIAKIEKPQAVSAIEEIALRFDAIMVA RGDLGVELPLEDVPVAQKEIVKVARRFARPVIIATQMLESMISSSRPTRAEASDVANAVLDGADALMLSGETSVGEWPVE AVRVMSRVIEKTEEKAISQIVGFGTTPKTQGGALAWAAAKVAEFIDARYLCVFSESGDSIRRVSRLRHDIPIIGFSPVES VVRQVSLSWGVRCFLIERLHQTDQMMRKAEHVLLTNNLAEIGEKIVIISGSPVGVPGSTNHMRIHELGSTS
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI33286422, Length=487, Percent_Identity=36.7556468172485, Blast_Score=278, Evalue=1e-74, Organism=Homo sapiens, GI33286420, Length=487, Percent_Identity=36.7556468172485, Blast_Score=278, Evalue=1e-74, Organism=Homo sapiens, GI33286418, Length=491, Percent_Identity=37.0672097759674, Blast_Score=275, Evalue=9e-74, Organism=Homo sapiens, GI32967597, Length=489, Percent_Identity=36.6053169734151, Blast_Score=261, Evalue=9e-70, Organism=Homo sapiens, GI10835121, Length=489, Percent_Identity=36.6053169734151, Blast_Score=261, Evalue=1e-69, Organism=Homo sapiens, GI310128732, Length=288, Percent_Identity=36.8055555555556, Blast_Score=176, Evalue=4e-44, Organism=Homo sapiens, GI310128730, Length=288, Percent_Identity=36.8055555555556, Blast_Score=176, Evalue=4e-44, Organism=Homo sapiens, GI310128736, Length=236, Percent_Identity=34.3220338983051, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI310128734, Length=236, Percent_Identity=34.3220338983051, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI310128738, Length=215, Percent_Identity=34.8837209302326, Blast_Score=121, Evalue=1e-27, Organism=Escherichia coli, GI1787965, Length=471, Percent_Identity=36.7303609341826, Blast_Score=296, Evalue=2e-81, Organism=Escherichia coli, GI1788160, Length=476, Percent_Identity=38.4453781512605, Blast_Score=289, Evalue=3e-79, Organism=Caenorhabditis elegans, GI17544584, Length=480, Percent_Identity=35.8333333333333, Blast_Score=271, Evalue=4e-73, Organism=Caenorhabditis elegans, GI17506829, Length=485, Percent_Identity=35.8762886597938, Blast_Score=236, Evalue=1e-62, Organism=Caenorhabditis elegans, GI71984406, Length=485, Percent_Identity=35.8762886597938, Blast_Score=236, Evalue=2e-62, Organism=Caenorhabditis elegans, GI71984413, Length=485, Percent_Identity=35.8762886597938, Blast_Score=236, Evalue=2e-62, Organism=Caenorhabditis elegans, GI17506831, Length=485, Percent_Identity=35.8762886597938, Blast_Score=236, Evalue=2e-62, Organism=Saccharomyces cerevisiae, GI6319279, Length=431, Percent_Identity=36.6589327146172, Blast_Score=245, Evalue=9e-66, Organism=Saccharomyces cerevisiae, GI6324923, Length=492, Percent_Identity=32.3170731707317, Blast_Score=232, Evalue=8e-62, Organism=Drosophila melanogaster, GI24648964, Length=490, Percent_Identity=36.3265306122449, Blast_Score=268, Evalue=4e-72, Organism=Drosophila melanogaster, GI28571814, Length=490, Percent_Identity=36.3265306122449, Blast_Score=268, Evalue=5e-72, Organism=Drosophila melanogaster, GI24648966, Length=411, Percent_Identity=38.4428223844282, Blast_Score=256, Evalue=2e-68, Organism=Drosophila melanogaster, GI24581235, Length=485, Percent_Identity=30.9278350515464, Blast_Score=212, Evalue=5e-55, Organism=Drosophila melanogaster, GI24646914, Length=182, Percent_Identity=45.6043956043956, Blast_Score=153, Evalue=2e-37,
Paralogues:
None
Copy number: 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 124 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR018209 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 50997; Mature: 50997
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: PS00110 PYRUVATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRAKIVVTLGPAVSDLDSVRDLISAGADVFRMNLSHGSLDFHREVFLNVRTAAAELDRH CCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCE IAIFADLQGPKIRLGRFASGPYTLQEGDIFTITTEQVLGTKELSSTTLPTLPDNVSEGDL EEEEEECCCCEEEEEEECCCCEEEECCCEEEEEHHHHHCCHHHCCCCCCCCCCCCCCCCE LLIDDGKVALRAIGNDGVRITTRVEVPGKVSNNKGINLPGVGVKVPALSEKDIDSLRWAL EEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHH SLPVDMIALSFVRCASDVDAVHKVMDEEGIRLPVIAKIEKPQAVSAIEEIALRFDAIMVA CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHEEEEE RGDLGVELPLEDVPVAQKEIVKVARRFARPVIIATQMLESMISSSRPTRAEASDVANAVL ECCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH DGADALMLSGETSVGEWPVEAVRVMSRVIEKTEEKAISQIVGFGTTPKTQGGALAWAAAK CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH VAEFIDARYLCVFSESGDSIRRVSRLRHDIPIIGFSPVESVVRQVSLSWGVRCFLIERLH HHHHHCCEEEEEECCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCHHHHHHHHHH QTDQMMRKAEHVLLTNNLAEIGEKIVIISGSPVGVPGSTNHMRIHELGSTS HHHHHHHHHHHEEEECCHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCC >Mature Secondary Structure MRRAKIVVTLGPAVSDLDSVRDLISAGADVFRMNLSHGSLDFHREVFLNVRTAAAELDRH CCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCE IAIFADLQGPKIRLGRFASGPYTLQEGDIFTITTEQVLGTKELSSTTLPTLPDNVSEGDL EEEEEECCCCEEEEEEECCCCEEEECCCEEEEEHHHHHCCHHHCCCCCCCCCCCCCCCCE LLIDDGKVALRAIGNDGVRITTRVEVPGKVSNNKGINLPGVGVKVPALSEKDIDSLRWAL EEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHH SLPVDMIALSFVRCASDVDAVHKVMDEEGIRLPVIAKIEKPQAVSAIEEIALRFDAIMVA CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHEEEEE RGDLGVELPLEDVPVAQKEIVKVARRFARPVIIATQMLESMISSSRPTRAEASDVANAVL ECCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH DGADALMLSGETSVGEWPVEAVRVMSRVIEKTEEKAISQIVGFGTTPKTQGGALAWAAAK CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH VAEFIDARYLCVFSESGDSIRRVSRLRHDIPIIGFSPVESVVRQVSLSWGVRCFLIERLH HHHHHCCEEEEEECCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCHHHHHHHHHH QTDQMMRKAEHVLLTNNLAEIGEKIVIISGSPVGVPGSTNHMRIHELGSTS HHHHHHHHHHHEEEECCHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8074528; 12948626 [H]