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The map label for this gene is pdtaR [H]

Identifier: 28572630

GI number: 28572630

Start: 518480

End: 519088

Strand: Reverse

Name: pdtaR [H]

Synonym: TW481

Alternate gene names: 28572630

Gene position: 519088-518480 (Counterclockwise)

Preceding gene: 28572631

Following gene: 28572629

Centisome position: 56.06

GC content: 44.66

Gene sequence:

>609_bases
TTGATGAGAAATGAAAGTTTCCCTCTGCAGACAGCAGACCTGTCACCTTGTGCCGTCGTAGCGGAGGATGAGTCTATTAT
TCGCATGGATATCAATGACATTATGAGTGATGCTGGTTATAAGGTTGTCGCCGAGGCTGGCGATGGAGAAACTGCGGTTG
CCCTTACACTCGAACACAACCCAGATATTGTTGTTATGGATATAAAAATGCCCTTTATGGATGGCATTACCGCAGCGGAA
AAAATTAGTAGCCGTTCGGCAGTCGTTCTTCTCACCGCTTTCAATCAACAAGAGCTTGTTGAGAGGGCTGTCGATGCGGG
GGTTATGGCTTATGTTTCAAAGCCATTTTCTCGAGGGAATCTTATCCCTGCAGTTGCGGTTGCACTCGAAAGATTCAGGA
AAATTAACTCGCTGCAAAAGCAACTTGATGATGCTAGCACTCATCTTGAGATCAGGAAACTAACTGATCATGCTAAGGGT
TTGCTTTGTAAACATATGGGTCTTAGCGAGCCGGAAGCGTTTAGGTGGATACAGAAAATGTCAATGAATCGGAGAATTAG
CATGAAAGAAGTTTCAAAGAGCATCATTGCGCAATTAGCCGGCAAATAG

Upstream 100 bases:

>100_bases
CCCACACGCCCATGAGGGCAAAGCATTTTGAGTGCTCCGCGTCTGCCGTTCCGCCACGCCGGCTGACTTTAACGATACAC
TATGTCCTCAGGGGAGGTAT

Downstream 100 bases:

>100_bases
AACAGTTATAAAAGCTTGACGGGCACACCAGACCAAAGTAAGAGACTTATTTTAGTAGATGGCCACTCTCTTGCTTTTAG
ATCCTTTTACGGAACGAAAG

Product: two-component system response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MMRNESFPLQTADLSPCAVVAEDESIIRMDINDIMSDAGYKVVAEAGDGETAVALTLEHNPDIVVMDIKMPFMDGITAAE
KISSRSAVVLLTAFNQQELVERAVDAGVMAYVSKPFSRGNLIPAVAVALERFRKINSLQKQLDDASTHLEIRKLTDHAKG
LLCKHMGLSEPEAFRWIQKMSMNRRISMKEVSKSIIAQLAGK

Sequences:

>Translated_202_residues
MMRNESFPLQTADLSPCAVVAEDESIIRMDINDIMSDAGYKVVAEAGDGETAVALTLEHNPDIVVMDIKMPFMDGITAAE
KISSRSAVVLLTAFNQQELVERAVDAGVMAYVSKPFSRGNLIPAVAVALERFRKINSLQKQLDDASTHLEIRKLTDHAKG
LLCKHMGLSEPEAFRWIQKMSMNRRISMKEVSKSIIAQLAGK
>Mature_202_residues
MMRNESFPLQTADLSPCAVVAEDESIIRMDINDIMSDAGYKVVAEAGDGETAVALTLEHNPDIVVMDIKMPFMDGITAAE
KISSRSAVVLLTAFNQQELVERAVDAGVMAYVSKPFSRGNLIPAVAVALERFRKINSLQKQLDDASTHLEIRKLTDHAKG
LLCKHMGLSEPEAFRWIQKMSMNRRISMKEVSKSIIAQLAGK

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=121, Percent_Identity=34.7107438016529, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22263; Mature: 22263

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRNESFPLQTADLSPCAVVAEDESIIRMDINDIMSDAGYKVVAEAGDGETAVALTLEHN
CCCCCCCCCEECCCCCEEEEECCCCEEEEEHHHHHCCCCCEEEEECCCCCEEEEEEEECC
PDIVVMDIKMPFMDGITAAEKISSRSAVVLLTAFNQQELVERAVDAGVMAYVSKPFSRGN
CCEEEEEECCCCHHCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCC
LIPAVAVALERFRKINSLQKQLDDASTHLEIRKLTDHAKGLLCKHMGLSEPEAFRWIQKM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
SMNRRISMKEVSKSIIAQLAGK
HHCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMRNESFPLQTADLSPCAVVAEDESIIRMDINDIMSDAGYKVVAEAGDGETAVALTLEHN
CCCCCCCCCEECCCCCEEEEECCCCEEEEEHHHHHCCCCCEEEEECCCCCEEEEEEEECC
PDIVVMDIKMPFMDGITAAEKISSRSAVVLLTAFNQQELVERAVDAGVMAYVSKPFSRGN
CCEEEEEECCCCHHCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCC
LIPAVAVALERFRKINSLQKQLDDASTHLEIRKLTDHAKGLLCKHMGLSEPEAFRWIQKM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
SMNRRISMKEVSKSIIAQLAGK
HHCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]