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The map label for this gene is ydeB [H]

Identifier: 28572573

GI number: 28572573

Start: 459221

End: 459703

Strand: Direct

Name: ydeB [H]

Synonym: TW421

Alternate gene names: 28572573

Gene position: 459221-459703 (Clockwise)

Preceding gene: 28572572

Following gene: 28572574

Centisome position: 49.6

GC content: 48.45

Gene sequence:

>483_bases
ATGCAGTTCAAAGTGGGACAGACTGTGGTTTACCCTCATCATGGCACGGCATCCATTTTGGAAATAAAAAAGCGTGTTAT
TCGCGGTGAAGAGGTAACTTATCTGAAATTACATGTTTCAGATGGCGACTTGATGATAGAGGTGCCAGCCGAAAAAATAG
AGGCTGTGGGCTTGCGTGGCGTTATCGATTCAGACGGTGCCCGCAGGGTTGTTGAAGTTTTACGCGAGAATCTGGTTGAT
GAGCCAACCAATTGGTCCCGGCGCTACAAGAGTAATTTGGAAAAAATAGCGTCTGGGGATGTCACGAAGGTAACAGAGGT
TGTAAGGGATCTGTCGCGACGAGAGAAGACCCGTGTTCTTTCCGCTGGAGAAAAACGGATGCTTACCCGCGCCCGCGGTA
TTTTAGTTGCAGAGTTAGCGCTTGCCCGTCACACAAACCAGGAAGATGCGGAAGCTTTGCTTGATGAAGTGCTTGCTGAA
TAA

Upstream 100 bases:

>100_bases
ATAGCACAATTCTAACGTACATGTTTTATTAGAGGGTACACAAAACGTATATGAGTACTGCTTGCTGCGTGCATAACCTA
TAATTCCGTTAGGGGGTGGT

Downstream 100 bases:

>100_bases
GTCAGTATGGCAGTTGGATTGCTTTTGCTTGCGGCGGGTGTCGGTAGCAGGCTGTCTTCTTCTCTGCCGAAGGCATTTGT
CTCAGTTGGTGGTTTGGATT

Product: transcription regulator CarD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MQFKVGQTVVYPHHGTASILEIKKRVIRGEEVTYLKLHVSDGDLMIEVPAEKIEAVGLRGVIDSDGARRVVEVLRENLVD
EPTNWSRRYKSNLEKIASGDVTKVTEVVRDLSRREKTRVLSAGEKRMLTRARGILVAELALARHTNQEDAEALLDEVLAE

Sequences:

>Translated_160_residues
MQFKVGQTVVYPHHGTASILEIKKRVIRGEEVTYLKLHVSDGDLMIEVPAEKIEAVGLRGVIDSDGARRVVEVLRENLVD
EPTNWSRRYKSNLEKIASGDVTKVTEVVRDLSRREKTRVLSAGEKRMLTRARGILVAELALARHTNQEDAEALLDEVLAE
>Mature_160_residues
MQFKVGQTVVYPHHGTASILEIKKRVIRGEEVTYLKLHVSDGDLMIEVPAEKIEAVGLRGVIDSDGARRVVEVLRENLVD
EPTNWSRRYKSNLEKIASGDVTKVTEVVRDLSRREKTRVLSAGEKRMLTRARGILVAELALARHTNQEDAEALLDEVLAE

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 17969; Mature: 17969

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFKVGQTVVYPHHGTASILEIKKRVIRGEEVTYLKLHVSDGDLMIEVPAEKIEAVGLRG
CCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECHHHHHHHCCCC
VIDSDGARRVVEVLRENLVDEPTNWSRRYKSNLEKIASGDVTKVTEVVRDLSRREKTRVL
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
SAGEKRMLTRARGILVAELALARHTNQEDAEALLDEVLAE
HCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MQFKVGQTVVYPHHGTASILEIKKRVIRGEEVTYLKLHVSDGDLMIEVPAEKIEAVGLRG
CCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECHHHHHHHCCCC
VIDSDGARRVVEVLRENLVDEPTNWSRRYKSNLEKIASGDVTKVTEVVRDLSRREKTRVL
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
SAGEKRMLTRARGILVAELALARHTNQEDAEALLDEVLAE
HCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]