| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is pstS [H]
Identifier: 28572567
GI number: 28572567
Start: 452949
End: 454019
Strand: Direct
Name: pstS [H]
Synonym: TW415
Alternate gene names: 28572567
Gene position: 452949-454019 (Clockwise)
Preceding gene: 28572565
Following gene: 28572568
Centisome position: 48.92
GC content: 47.71
Gene sequence:
>1071_bases GTGTGTCGCTTGGATAGAAAGCTTTTTCTCGTATTTGCTTCAGTTGTAACTCTTTTTTCTGTTTCATGTTTTGGAAACTC CAAAACCTCTTTAGAGGGGTCGGTATCAGTAACTGGGGCTTCTAGTCAGAGCGTGGCCCAATCAGTTTGGATATCAGAAT TTCGCAAGATCCATCCGGGTGTAACAGTCAACTATGAACCTCAGGGGTCTGGTGCGGGGCGTAGGGCATTCTTGTCTGGT GCAGTTGATCTGGCCGCGACAGATGTTCCCTTTGCTGACCCCGAGCTCACGGGGGACTTTAAGGGTTGTACTGCGGATGG TCCGCTTCAGCTTCCTGTCTATATCTCTCCGATCGCGATAGCTTATAACCTTCCAGGGGTCTCTGACCTAAAACTTGACG CTTCCGTAATTGCTGGGATTTTCAGTGGGGCAATAACTACTTGGGATTCGCCTAGAATTTCCGCTCTCAACCCTGGCATA GAGTTGCCGAGTAAAAAGATAACCGCTGTGCACCGCTCGGATAATTCGGGGACTACGGAGAATTTTTCAGATTATATCCA TACTAATGCCCCCAGTGATTGGCCCCATAAACCATCAACTAAGTTCCCTTACACATACGGTGAGGCCGCTAAAGGTACCT CTGGGGTAGCGCAGGTTTTGAAAGCTACAGTTGGCTCTATAGGTTATTTGGATCTCTCTTTGGCTCGTGGAATGTCTCTT GCGACCCTGAAGGTTGGTTCGGGCTTTTCAAAACCATCGGCCGAGAGTGCTACCCTGACAGTGAGCGACTCTGAATTTCC GAGCAAGAATCCGAATAGTTTTTCTGTAAAGATAAATCGCAGGACAGAGAAAGCTGGCGCCTGGCCTCTTATCCTTGTCA GTTATGTCGTTGCTTGCGTTGGTTACAAAAAAGGCAACAAAGACGCTATTTTCTCGTATCTCAAGTTTATTCTTTCTGAA AAAGCCCAGGGTCAAGCAGCACAACAGGCTGGCTCTGCTCCATTGCCGGAATCTCTTTCAAAGAAACTCCTCGAGCTTGT CAATAAAATCGCTGAGAAAAACGGCGCCTAA
Upstream 100 bases:
>100_bases CGAATGCTACGTGGGAGAGGAATTTACCTGCCTCTAAAAAGATTTTGTAGTGTAAATTTCGTGTGTTACACTGCGACTGT CTTTTGTCGACTAGTGAAGG
Downstream 100 bases:
>100_bases GGGGAGGTCTGTCTTTGCTTTTCCGCCCCCATTGCGTGTTTTTGCTGATGGTGCGTTCTAAGTTTCTGTAAGGTCTTTTT TCGTGCGTAAGGACTTCTTC
Product: ABC transporter phosphate-binding lipoprotein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP 3; PstS-3 [H]
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MCRLDRKLFLVFASVVTLFSVSCFGNSKTSLEGSVSVTGASSQSVAQSVWISEFRKIHPGVTVNYEPQGSGAGRRAFLSG AVDLAATDVPFADPELTGDFKGCTADGPLQLPVYISPIAIAYNLPGVSDLKLDASVIAGIFSGAITTWDSPRISALNPGI ELPSKKITAVHRSDNSGTTENFSDYIHTNAPSDWPHKPSTKFPYTYGEAAKGTSGVAQVLKATVGSIGYLDLSLARGMSL ATLKVGSGFSKPSAESATLTVSDSEFPSKNPNSFSVKINRRTEKAGAWPLILVSYVVACVGYKKGNKDAIFSYLKFILSE KAQGQAAQQAGSAPLPESLSKKLLELVNKIAEKNGA
Sequences:
>Translated_356_residues MCRLDRKLFLVFASVVTLFSVSCFGNSKTSLEGSVSVTGASSQSVAQSVWISEFRKIHPGVTVNYEPQGSGAGRRAFLSG AVDLAATDVPFADPELTGDFKGCTADGPLQLPVYISPIAIAYNLPGVSDLKLDASVIAGIFSGAITTWDSPRISALNPGI ELPSKKITAVHRSDNSGTTENFSDYIHTNAPSDWPHKPSTKFPYTYGEAAKGTSGVAQVLKATVGSIGYLDLSLARGMSL ATLKVGSGFSKPSAESATLTVSDSEFPSKNPNSFSVKINRRTEKAGAWPLILVSYVVACVGYKKGNKDAIFSYLKFILSE KAQGQAAQQAGSAPLPESLSKKLLELVNKIAEKNGA >Mature_356_residues MCRLDRKLFLVFASVVTLFSVSCFGNSKTSLEGSVSVTGASSQSVAQSVWISEFRKIHPGVTVNYEPQGSGAGRRAFLSG AVDLAATDVPFADPELTGDFKGCTADGPLQLPVYISPIAIAYNLPGVSDLKLDASVIAGIFSGAITTWDSPRISALNPGI ELPSKKITAVHRSDNSGTTENFSDYIHTNAPSDWPHKPSTKFPYTYGEAAKGTSGVAQVLKATVGSIGYLDLSLARGMSL ATLKVGSGFSKPSAESATLTVSDSEFPSKNPNSFSVKINRRTEKAGAWPLILVSYVVACVGYKKGNKDAIFSYLKFILSE KAQGQAAQQAGSAPLPESLSKKLLELVNKIAEKNGA
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
Organism=Escherichia coli, GI2367271, Length=320, Percent_Identity=28.125, Blast_Score=117, Evalue=1e-27,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005673 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 37554; Mature: 37554
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCRLDRKLFLVFASVVTLFSVSCFGNSKTSLEGSVSVTGASSQSVAQSVWISEFRKIHPG CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCC VTVNYEPQGSGAGRRAFLSGAVDLAATDVPFADPELTGDFKGCTADGPLQLPVYISPIAI CEEEECCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCEEECCEEE AYNLPGVSDLKLDASVIAGIFSGAITTWDSPRISALNPGIELPSKKITAVHRSDNSGTTE EECCCCCCCCCHHHHHHHHHHHCCEECCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCC NFSDYIHTNAPSDWPHKPSTKFPYTYGEAAKGTSGVAQVLKATVGSIGYLDLSLARGMSL CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHCCCEE ATLKVGSGFSKPSAESATLTVSDSEFPSKNPNSFSVKINRRTEKAGAWPLILVSYVVACV EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH GYKKGNKDAIFSYLKFILSEKAQGQAAQQAGSAPLPESLSKKLLELVNKIAEKNGA CCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MCRLDRKLFLVFASVVTLFSVSCFGNSKTSLEGSVSVTGASSQSVAQSVWISEFRKIHPG CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCC VTVNYEPQGSGAGRRAFLSGAVDLAATDVPFADPELTGDFKGCTADGPLQLPVYISPIAI CEEEECCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCEEECCEEE AYNLPGVSDLKLDASVIAGIFSGAITTWDSPRISALNPGIELPSKKITAVHRSDNSGTTE EECCCCCCCCCHHHHHHHHHHHCCEECCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCC NFSDYIHTNAPSDWPHKPSTKFPYTYGEAAKGTSGVAQVLKATVGSIGYLDLSLARGMSL CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHCCCEE ATLKVGSGFSKPSAESATLTVSDSEFPSKNPNSFSVKINRRTEKAGAWPLILVSYVVACV EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH GYKKGNKDAIFSYLKFILSEKAQGQAAQQAGSAPLPESLSKKLLELVNKIAEKNGA CCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA