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The map label for this gene is rpe [H]

Identifier: 28572565

GI number: 28572565

Start: 450954

End: 451613

Strand: Direct

Name: rpe [H]

Synonym: TW413

Alternate gene names: 28572565

Gene position: 450954-451613 (Clockwise)

Preceding gene: 28572564

Following gene: 28572567

Centisome position: 48.7

GC content: 42.27

Gene sequence:

>660_bases
ATGAAGATTCGTATAAGTCCGAGTATATTGTCGGCAGATTTTTGTAATCTTGAGCGGGATCTTCAACTTATATCTAGTGC
AGACATGGTGCATGTTGATGTGATGGATGGGCATTTTGTGCCGAATATCACCTTTGGTCTTCCTGTTGTGAAAAGAATAT
GCGAAGTTTCACCGGTTCCGCTCGATGTTCATCTAATGGTCGAAAATCCAGATTATTGGGCTTTGCAATACGCTGACCTT
GGTGTTTATTCCGTCACATTCCACTTTGAAGCAGCGAAAGATCCAATTGCAACTGCCAGAAATATACGATCTAACAAATC
AAAAGTTGGACTTGCGGTAAGTCCCGATACTGATATTGGGGAATGTGTACACGTTTTACCAGAAGTAGATATGCTGCAGG
TCATGACAGTTTACCCTGGATTTGGCGGACAAAAGCTTATCCGAAGGGTTCTTGATAAATTTTCTAGAATTACCCGATCA
GAGTTTGAAAACCTATCGTTTTCAGTTGACGGCGGTGTAACATTGGGTAATATCTCAGAAATTGCCTCTGTTGGGGTGGA
CACATTTGTTGCAGGGTCGAGCGTTTTTCTATCTCAATTACCTGCCGATAGCGTCGAGTCCCTCAGGAAACTTGCCAAAG
TGGCTTATAAAAGATCTTAG

Upstream 100 bases:

>100_bases
TCCTAATTGGCTAGACTTTATGCGCATAAAGCAGTTTGTGCGTTTGTAATGTCGTCTAAATCACTTGTTAGGGTTTCTCT
GAATATAGAATTATTGGGCA

Downstream 100 bases:

>100_bases
AGATACTTGCCTGTTCGAAGCCATTCGATCTGGTCACCCAATAGGGTTACAATACATCATCTCGGCCAGACAATCGCAGT
GCCTCGACTATCTGTTTTAC

Product: D-ribulose-5-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKIRISPSILSADFCNLERDLQLISSADMVHVDVMDGHFVPNITFGLPVVKRICEVSPVPLDVHLMVENPDYWALQYADL
GVYSVTFHFEAAKDPIATARNIRSNKSKVGLAVSPDTDIGECVHVLPEVDMLQVMTVYPGFGGQKLIRRVLDKFSRITRS
EFENLSFSVDGGVTLGNISEIASVGVDTFVAGSSVFLSQLPADSVESLRKLAKVAYKRS

Sequences:

>Translated_219_residues
MKIRISPSILSADFCNLERDLQLISSADMVHVDVMDGHFVPNITFGLPVVKRICEVSPVPLDVHLMVENPDYWALQYADL
GVYSVTFHFEAAKDPIATARNIRSNKSKVGLAVSPDTDIGECVHVLPEVDMLQVMTVYPGFGGQKLIRRVLDKFSRITRS
EFENLSFSVDGGVTLGNISEIASVGVDTFVAGSSVFLSQLPADSVESLRKLAKVAYKRS
>Mature_219_residues
MKIRISPSILSADFCNLERDLQLISSADMVHVDVMDGHFVPNITFGLPVVKRICEVSPVPLDVHLMVENPDYWALQYADL
GVYSVTFHFEAAKDPIATARNIRSNKSKVGLAVSPDTDIGECVHVLPEVDMLQVMTVYPGFGGQKLIRRVLDKFSRITRS
EFENLSFSVDGGVTLGNISEIASVGVDTFVAGSSVFLSQLPADSVESLRKLAKVAYKRS

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=221, Percent_Identity=41.1764705882353, Blast_Score=161, Evalue=5e-40,
Organism=Homo sapiens, GI219879828, Length=221, Percent_Identity=39.8190045248869, Blast_Score=152, Evalue=3e-37,
Organism=Homo sapiens, GI24307923, Length=176, Percent_Identity=33.5227272727273, Blast_Score=99, Evalue=2e-21,
Organism=Escherichia coli, GI1789788, Length=221, Percent_Identity=41.6289592760181, Blast_Score=150, Evalue=8e-38,
Organism=Escherichia coli, GI1790523, Length=197, Percent_Identity=34.5177664974619, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1790754, Length=196, Percent_Identity=30.1020408163265, Blast_Score=94, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17552948, Length=221, Percent_Identity=38.4615384615385, Blast_Score=151, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6322341, Length=221, Percent_Identity=38.4615384615385, Blast_Score=162, Evalue=3e-41,
Organism=Drosophila melanogaster, GI24586301, Length=212, Percent_Identity=38.2075471698113, Blast_Score=147, Evalue=7e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24033; Mature: 24033

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRISPSILSADFCNLERDLQLISSADMVHVDVMDGHFVPNITFGLPVVKRICEVSPVP
CEEEECCCHHHHHHHCHHHHHHHHCCCCEEEEEEECCCCCCCCEECHHHHHHHHCCCCCC
LDVHLMVENPDYWALQYADLGVYSVTFHFEAAKDPIATARNIRSNKSKVGLAVSPDTDIG
EEEEEEEECCCEEEEEEECCCEEEEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCHH
ECVHVLPEVDMLQVMTVYPGFGGQKLIRRVLDKFSRITRSEFENLSFSVDGGVTLGNISE
HHHHHCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCHHH
IASVGVDTFVAGSSVFLSQLPADSVESLRKLAKVAYKRS
HHHHCHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIRISPSILSADFCNLERDLQLISSADMVHVDVMDGHFVPNITFGLPVVKRICEVSPVP
CEEEECCCHHHHHHHCHHHHHHHHCCCCEEEEEEECCCCCCCCEECHHHHHHHHCCCCCC
LDVHLMVENPDYWALQYADLGVYSVTFHFEAAKDPIATARNIRSNKSKVGLAVSPDTDIG
EEEEEEEECCCEEEEEEECCCEEEEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCHH
ECVHVLPEVDMLQVMTVYPGFGGQKLIRRVLDKFSRITRSEFENLSFSVDGGVTLGNISE
HHHHHCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCHHH
IASVGVDTFVAGSSVFLSQLPADSVESLRKLAKVAYKRS
HHHHCHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]