| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is aroK [H]
Identifier: 28572551
GI number: 28572551
Start: 434582
End: 435082
Strand: Direct
Name: aroK [H]
Synonym: TW398
Alternate gene names: 28572551
Gene position: 434582-435082 (Clockwise)
Preceding gene: 28572550
Following gene: 28572552
Centisome position: 46.93
GC content: 43.71
Gene sequence:
>501_bases ATGGCTATCGTACTAATTGGTCCTCCTGCCGTCGGGAAAACCCTTTTGGGGGGTCTTGTTGCAAAGCGCCTTCGGGTAAT CTTTAACGATACAGATTTTCTAGTGGAAAAATTTTTTGGACCCGTGAAAGAACTGCTTTTAACCTGCGAAAGTCAGTTTA GAGATGCTGAGTCCATCTGCTTGCGAAATGCCCTCTCTCGCGGGGGTGTTGTCGCAACTGGTGCAGGGTGTGTTCAGCGA AAGGAAAATCAGAGGTACATATCCAGGCATTTAGTTATTTTTTTGCGCACCTCATGCGATAACGTCGCTCCACGCCTTTG TTTTGACACACGTCCCGTAACGGGTGATATTGAATCATGGATTGCTGTGTACAACAAACGAAAAGATATTTATTCAAAAC TGGCAGATATTGAATTTGATGTCAATAAGAGCAGTCCGATATCTTTAGCAGATCAACTTGTACGGTTTATTTACAATCGC TCTTGGCATCGAGAATTCTGA
Upstream 100 bases:
>100_bases AATAAAGCGGAATTTCTCTGGTTATCTTAACTCTATTCCAAAAAATCTCATGTCTGTCATAGAAAGATAGCTTCGGCCGT AATCGGATTAATTGGAATCA
Downstream 100 bases:
>100_bases TACCGTGCCTAGATTTTACTGTTGTCTTGCCGCAAGGTAGGTTGTAAAGGCGGAATCTTGTGATGAAGAAGTACTCGTTG ACAACGCACAGCACGGAAAC
Product: shikimate kinase
Products: NA
Alternate protein names: SK [H]
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MAIVLIGPPAVGKTLLGGLVAKRLRVIFNDTDFLVEKFFGPVKELLLTCESQFRDAESICLRNALSRGGVVATGAGCVQR KENQRYISRHLVIFLRTSCDNVAPRLCFDTRPVTGDIESWIAVYNKRKDIYSKLADIEFDVNKSSPISLADQLVRFIYNR SWHREF
Sequences:
>Translated_166_residues MAIVLIGPPAVGKTLLGGLVAKRLRVIFNDTDFLVEKFFGPVKELLLTCESQFRDAESICLRNALSRGGVVATGAGCVQR KENQRYISRHLVIFLRTSCDNVAPRLCFDTRPVTGDIESWIAVYNKRKDIYSKLADIEFDVNKSSPISLADQLVRFIYNR SWHREF >Mature_165_residues AIVLIGPPAVGKTLLGGLVAKRLRVIFNDTDFLVEKFFGPVKELLLTCESQFRDAESICLRNALSRGGVVATGAGCVQRK ENQRYISRHLVIFLRTSCDNVAPRLCFDTRPVTGDIESWIAVYNKRKDIYSKLADIEFDVNKSSPISLADQLVRFIYNRS WHREF
Specific function: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate [H]
COG id: COG0703
COG function: function code E; Shikimate kinase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate kinase family [H]
Homologues:
Organism=Escherichia coli, GI87082255, Length=164, Percent_Identity=29.8780487804878, Blast_Score=68, Evalue=3e-13,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000623 - InterPro: IPR023000 [H]
Pfam domain/function: PF01202 SKI [H]
EC number: =2.7.1.71 [H]
Molecular weight: Translated: 18797; Mature: 18666
Theoretical pI: Translated: 9.31; Mature: 9.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIVLIGPPAVGKTLLGGLVAKRLRVIFNDTDFLVEKFFGPVKELLLTCESQFRDAESIC CEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH LRNALSRGGVVATGAGCVQRKENQRYISRHLVIFLRTSCDNVAPRLCFDTRPVTGDIESW HHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHCCCCCCCCCCHHHH IAVYNKRKDIYSKLADIEFDVNKSSPISLADQLVRFIYNRSWHREF HHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure AIVLIGPPAVGKTLLGGLVAKRLRVIFNDTDFLVEKFFGPVKELLLTCESQFRDAESIC EEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH LRNALSRGGVVATGAGCVQRKENQRYISRHLVIFLRTSCDNVAPRLCFDTRPVTGDIESW HHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHCCCCCCCCCCHHHH IAVYNKRKDIYSKLADIEFDVNKSSPISLADQLVRFIYNRSWHREF HHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA