Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572445

Identifier: 28572445

GI number: 28572445

Start: 328727

End: 329056

Strand: Direct

Name: 28572445

Synonym: TW289

Alternate gene names: NA

Gene position: 328727-329056 (Clockwise)

Preceding gene: 28572444

Following gene: 28572446

Centisome position: 35.5

GC content: 42.42

Gene sequence:

>330_bases
ATGAATTATCTCAGGACAAAGGTTGCAAGAGTTGTTCTCTCTTTTGAGCTCGTTGCATTTATTCTCGCAGGTGTTTTTTT
GTTTACTATGCCATTTGACAGATTCCCTTCAGGGATTTTTATTGCTGTTGTGGTTCCGATGGCTTTTCTTGCGCTGCTCC
TTAGTTCAAAGCTTTTCGGTATCACACTGGGCTGGATTGTGCAAATCTTTATTGTCACCGTTGGGTTTTTTATATCTATT
CCAATTGCGATATTTGGGTTTATATTTGGCACGCTGTGGGCCTATGCGCTTTGGTCTGCGAGGCACCATAACGGGCATAT
GAGGCAATAG

Upstream 100 bases:

>100_bases
GCGAATGATGCGTTTCAGTACAGTACCAGGCTTAATCCGGATGCCATTGTTGTCTCCGGCTCTATCAGCATTCTTAGTAG
TTTTATTCCGCGATAAATAA

Downstream 100 bases:

>100_bases
GATTTGGATTAGACTGTGCTAGTCGGTAAATACTGTGCTAGTCGGTAAATAAGGGGGAATTATTTTGGAGCAGACACTCG
TGATTATCAAGCCAGATGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MNYLRTKVARVVLSFELVAFILAGVFLFTMPFDRFPSGIFIAVVVPMAFLALLLSSKLFGITLGWIVQIFIVTVGFFISI
PIAIFGFIFGTLWAYALWSARHHNGHMRQ

Sequences:

>Translated_109_residues
MNYLRTKVARVVLSFELVAFILAGVFLFTMPFDRFPSGIFIAVVVPMAFLALLLSSKLFGITLGWIVQIFIVTVGFFISI
PIAIFGFIFGTLWAYALWSARHHNGHMRQ
>Mature_109_residues
MNYLRTKVARVVLSFELVAFILAGVFLFTMPFDRFPSGIFIAVVVPMAFLALLLSSKLFGITLGWIVQIFIVTVGFFISI
PIAIFGFIFGTLWAYALWSARHHNGHMRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12316; Mature: 12316

Theoretical pI: Translated: 11.47; Mature: 11.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYLRTKVARVVLSFELVAFILAGVFLFTMPFDRFPSGIFIAVVVPMAFLALLLSSKLFG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ITLGWIVQIFIVTVGFFISIPIAIFGFIFGTLWAYALWSARHHNGHMRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNYLRTKVARVVLSFELVAFILAGVFLFTMPFDRFPSGIFIAVVVPMAFLALLLSSKLFG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ITLGWIVQIFIVTVGFFISIPIAIFGFIFGTLWAYALWSARHHNGHMRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA