The gene/protein map for NC_004551 is currently unavailable.
Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

Click here to switch to the map view.

The map label for this gene is 28572343

Identifier: 28572343

GI number: 28572343

Start: 223106

End: 223651

Strand: Direct

Name: 28572343

Synonym: TW181

Alternate gene names: NA

Gene position: 223106-223651 (Clockwise)

Preceding gene: 28572342

Following gene: 28572344

Centisome position: 24.1

GC content: 48.9

Gene sequence:

>546_bases
ATGGTGATGAGTGTGGTTAAAATGAGGATTCTTGCCGCATTGCTAACAATCCCTTTAATGTTTCTGATCGCAATCGGGCC
TGTTAGCGCGGAGACGCAGCACGTACAAGAAACAGCCATAAGGTTGACAGCTGATGACACAAACCAAATAATCAAAGAAC
TAGAACAAGCAGGATTCACCAAACAAGTAACAGGTAACAAGAGACAAGAAACAATAACCCTAACCAAGGATGGTGTAACT
GTAACCCTTACACATGTAACACAACAGACACAGACAAGACTTTCCTGGGGTGATGACCCATGGGGTTTCTACATAAAACT
GGAATGGCATGAACAAGTTGCCCTTGCTGCAGGCACTCTTGCCGCTGGTGGCGGTGCCGGCCTGGCCCTTAAGGCCGCTC
TAAAAATAGCCGTGAAGGCAGGCACCGCATTTCTGGCTGGCCTGGAGGTGGTAGACAAGTTGAGTGACATCATTGGCGCA
GGGCCCTGCCCTCCCTTCCAACCCCGCTACATCCGCTTTGATCCCTTCAGAACCAAATGCAATTAA

Upstream 100 bases:

>100_bases
TTTATGTGTTAAATCAGGTGTTACAATGCGTGGACCATGTGTTAAAATGTAGGCGTCCATTACAGAGAGAGGGCGAGTCT
GTAATGATTGAATATGTGTA

Downstream 100 bases:

>100_bases
CCCAGGTGGCTTTGTTGCAAGCGTATGTAATGCACTTCGTGCAACTCGCCTGCTGTGGGTGCTGACGCGATGAACAGACA
ATCATCCTTCTTTCCCCTCC

Product: secreted protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MVMSVVKMRILAALLTIPLMFLIAIGPVSAETQHVQETAIRLTADDTNQIIKELEQAGFTKQVTGNKRQETITLTKDGVT
VTLTHVTQQTQTRLSWGDDPWGFYIKLEWHEQVALAAGTLAAGGGAGLALKAALKIAVKAGTAFLAGLEVVDKLSDIIGA
GPCPPFQPRYIRFDPFRTKCN

Sequences:

>Translated_181_residues
MVMSVVKMRILAALLTIPLMFLIAIGPVSAETQHVQETAIRLTADDTNQIIKELEQAGFTKQVTGNKRQETITLTKDGVT
VTLTHVTQQTQTRLSWGDDPWGFYIKLEWHEQVALAAGTLAAGGGAGLALKAALKIAVKAGTAFLAGLEVVDKLSDIIGA
GPCPPFQPRYIRFDPFRTKCN
>Mature_181_residues
MVMSVVKMRILAALLTIPLMFLIAIGPVSAETQHVQETAIRLTADDTNQIIKELEQAGFTKQVTGNKRQETITLTKDGVT
VTLTHVTQQTQTRLSWGDDPWGFYIKLEWHEQVALAAGTLAAGGGAGLALKAALKIAVKAGTAFLAGLEVVDKLSDIIGA
GPCPPFQPRYIRFDPFRTKCN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19589; Mature: 19589

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMSVVKMRILAALLTIPLMFLIAIGPVSAETQHVQETAIRLTADDTNQIIKELEQAGFT
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEECCCHHHHHHHHHHCCCE
KQVTGNKRQETITLTKDGVTVTLTHVTQQTQTRLSWGDDPWGFYIKLEWHEQVALAAGTL
EECCCCCCCEEEEEEECCEEEEEEEHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHCCC
AAGGGAGLALKAALKIAVKAGTAFLAGLEVVDKLSDIIGAGPCPPFQPRYIRFDPFRTKC
CCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC
N
C
>Mature Secondary Structure
MVMSVVKMRILAALLTIPLMFLIAIGPVSAETQHVQETAIRLTADDTNQIIKELEQAGFT
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEECCCHHHHHHHHHHCCCE
KQVTGNKRQETITLTKDGVTVTLTHVTQQTQTRLSWGDDPWGFYIKLEWHEQVALAAGTL
EECCCCCCCEEEEEEECCEEEEEEEHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHCCC
AAGGGAGLALKAALKIAVKAGTAFLAGLEVVDKLSDIIGAGPCPPFQPRYIRFDPFRTKC
CCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA