| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572299
Identifier: 28572299
GI number: 28572299
Start: 144961
End: 146340
Strand: Direct
Name: 28572299
Synonym: TW136
Alternate gene names: NA
Gene position: 144961-146340 (Clockwise)
Preceding gene: 28572298
Following gene: 28572300
Centisome position: 15.66
GC content: 47.39
Gene sequence:
>1380_bases ATGAAAATTTTTCCGAAAATACTTAACTGTTTTATTCTGGTTTTGTTACCGGCGATTGTCTTTTTATTTAGCGGTGTTCA CATAACAACTGCAGTTGGTGTGCGCCACAAAACCAAGGTTACATCGATCGAACTTCGGCTGTCTTGCCCCGGCTCACTTG TTGGTGTTGGTGGTGTGCATGCGCGCGGGATATCTTTTGTTCCGCTTGGAAACCCATCAGTTCTTTATGCCGCCTCTCAG GCAGGTCTTTTGAAGGCGGAGCATCCCTCTGGGGTTATGCTTCGTGGAGGCTACGGCACATCTGGTTCTCAAATTCAGGG GCTTAGCTCTGACAGGGTAAAAGGCCTGGCCGCCGCCTCATGCCAGCAACCTCGTCAGGAGAGTTGGCTCTTGGGCGGGG CAACAGGTGTATTTGATAATACACTTTTGATTCTTGGTAACCCCTCTGATTCTCAGACCAGTGTCTCATTTACCGTCTAC TCGGGTAATGAAAAGAAATTCTCCTCGGGTGTGCCGGTTCCCAGCAGAAGCCTTAGGTTCGTAAATCTTGCGGGAATAGC TCCCGGGCTTTCAAGAATTGCGGTTCAGGTCAAGTCTGACGATGTCCCGGTTTATTCAGTTTTGCAGCACTCCATAGTCA AGGGTGCAGTTCCCATGGGGGTCTCGTATGTATCGACCGGCAACATTGACAAAAGTCAATATATCCCCGGGGTGATTATC AATGACAATACGATTAACGATAATGATAATCCCCAGATTCTCCTTAGGCTATTTGTGCCAGGTAAAGACGATGCTGACGT CTCTGTTAGTGTTGTTTCAAAAACCACTCCGGGCACAGCTCTTACTGCACATGTGACCGGAGGGTCAATACGAGATATAC CAATTTCTGGCCTTACATCCTCAAGTTATTTTATTTCTATTACAAGCTCTAAACCGCTTTTAGCGTCAGCCCTGTCTTCT ATGTCATTTCAGTCGGGTGCACGGGATTTTGCGTGGTATCCGGCAACCCATGCCACTTCTGCGGATACTTTTATTGCCGT TCCAAGCCGTGGCGTCTTGGCTCTTCAAAATACCCTTGACCAGTCCCAGTCCGTAAAACTTGAATCCTTGAATGGATTTT CGGATTCATTTCCTAGCGGGTTTGTAAATACATCACATGTTTTTGTGCCAAAACAGCCAGAAGTCACAAATTCAACCGTG ATACATCTTGATCGCAGTGGCGTCGCGACACATCCAGTCTCCCGCGGGTTTTACAGATTATCCCATAAGGGCCAAGTGGC ATTTTCCTTAGCGTTTGTTAATTCAGAAGGTATTGCAATGTACAATCCACCTACGGGCGACACACGACCCGATGGTATAA CAGTTGATGTGCTGCAGTGA
Upstream 100 bases:
>100_bases ATTGACCTAGAGGATCAATTTGCGGAGCCTGGATATGCACTCACATAGGAATATCTCTGTGTTATCTGCTTGATCAGGAT GTATTTGGGATCTCTAAGCA
Downstream 100 bases:
>100_bases ACTCTCGTGACATTTCACTACAGTAAATTGTCTCCCTTCTGTATCGCCTATCTGTATTGCCTAATACCCGCGGTGCCTTT TACCCGTTTTCTGCTATGCC
Product: secreted protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MKIFPKILNCFILVLLPAIVFLFSGVHITTAVGVRHKTKVTSIELRLSCPGSLVGVGGVHARGISFVPLGNPSVLYAASQ AGLLKAEHPSGVMLRGGYGTSGSQIQGLSSDRVKGLAAASCQQPRQESWLLGGATGVFDNTLLILGNPSDSQTSVSFTVY SGNEKKFSSGVPVPSRSLRFVNLAGIAPGLSRIAVQVKSDDVPVYSVLQHSIVKGAVPMGVSYVSTGNIDKSQYIPGVII NDNTINDNDNPQILLRLFVPGKDDADVSVSVVSKTTPGTALTAHVTGGSIRDIPISGLTSSSYFISITSSKPLLASALSS MSFQSGARDFAWYPATHATSADTFIAVPSRGVLALQNTLDQSQSVKLESLNGFSDSFPSGFVNTSHVFVPKQPEVTNSTV IHLDRSGVATHPVSRGFYRLSHKGQVAFSLAFVNSEGIAMYNPPTGDTRPDGITVDVLQ
Sequences:
>Translated_459_residues MKIFPKILNCFILVLLPAIVFLFSGVHITTAVGVRHKTKVTSIELRLSCPGSLVGVGGVHARGISFVPLGNPSVLYAASQ AGLLKAEHPSGVMLRGGYGTSGSQIQGLSSDRVKGLAAASCQQPRQESWLLGGATGVFDNTLLILGNPSDSQTSVSFTVY SGNEKKFSSGVPVPSRSLRFVNLAGIAPGLSRIAVQVKSDDVPVYSVLQHSIVKGAVPMGVSYVSTGNIDKSQYIPGVII NDNTINDNDNPQILLRLFVPGKDDADVSVSVVSKTTPGTALTAHVTGGSIRDIPISGLTSSSYFISITSSKPLLASALSS MSFQSGARDFAWYPATHATSADTFIAVPSRGVLALQNTLDQSQSVKLESLNGFSDSFPSGFVNTSHVFVPKQPEVTNSTV IHLDRSGVATHPVSRGFYRLSHKGQVAFSLAFVNSEGIAMYNPPTGDTRPDGITVDVLQ >Mature_459_residues MKIFPKILNCFILVLLPAIVFLFSGVHITTAVGVRHKTKVTSIELRLSCPGSLVGVGGVHARGISFVPLGNPSVLYAASQ AGLLKAEHPSGVMLRGGYGTSGSQIQGLSSDRVKGLAAASCQQPRQESWLLGGATGVFDNTLLILGNPSDSQTSVSFTVY SGNEKKFSSGVPVPSRSLRFVNLAGIAPGLSRIAVQVKSDDVPVYSVLQHSIVKGAVPMGVSYVSTGNIDKSQYIPGVII NDNTINDNDNPQILLRLFVPGKDDADVSVSVVSKTTPGTALTAHVTGGSIRDIPISGLTSSSYFISITSSKPLLASALSS MSFQSGARDFAWYPATHATSADTFIAVPSRGVLALQNTLDQSQSVKLESLNGFSDSFPSGFVNTSHVFVPKQPEVTNSTV IHLDRSGVATHPVSRGFYRLSHKGQVAFSLAFVNSEGIAMYNPPTGDTRPDGITVDVLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48274; Mature: 48274
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIFPKILNCFILVLLPAIVFLFSGVHITTAVGVRHKTKVTSIELRLSCPGSLVGVGGVH CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEEEECCCCEEECCCEE ARGISFVPLGNPSVLYAASQAGLLKAEHPSGVMLRGGYGTSGSQIQGLSSDRVKGLAAAS ECCEEEEECCCCCEEEEECCCCEEEECCCCCEEEECCCCCCCCEEECCCCHHHCCHHHHH CQQPRQESWLLGGATGVFDNTLLILGNPSDSQTSVSFTVYSGNEKKFSSGVPVPSRSLRF CCCCCHHCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCEECCCCCCCCCCEEE VNLAGIAPGLSRIAVQVKSDDVPVYSVLQHSIVKGAVPMGVSYVSTGNIDKSQYIPGVII EEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHCCCEEEE NDNTINDNDNPQILLRLFVPGKDDADVSVSVVSKTTPGTALTAHVTGGSIRDIPISGLTS ECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEECCCCEEECCCCCCCC SSYFISITSSKPLLASALSSMSFQSGARDFAWYPATHATSADTFIAVPSRGVLALQNTLD CEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEECCCCEEEEHHHCC QSQSVKLESLNGFSDSFPSGFVNTSHVFVPKQPEVTNSTVIHLDRSGVATHPVSRGFYRL CCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEE SHKGQVAFSLAFVNSEGIAMYNPPTGDTRPDGITVDVLQ CCCCCEEEEEEEECCCCEEEECCCCCCCCCCCEEEEEEC >Mature Secondary Structure MKIFPKILNCFILVLLPAIVFLFSGVHITTAVGVRHKTKVTSIELRLSCPGSLVGVGGVH CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEEEECCCCEEECCCEE ARGISFVPLGNPSVLYAASQAGLLKAEHPSGVMLRGGYGTSGSQIQGLSSDRVKGLAAAS ECCEEEEECCCCCEEEEECCCCEEEECCCCCEEEECCCCCCCCEEECCCCHHHCCHHHHH CQQPRQESWLLGGATGVFDNTLLILGNPSDSQTSVSFTVYSGNEKKFSSGVPVPSRSLRF CCCCCHHCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCEECCCCCCCCCCEEE VNLAGIAPGLSRIAVQVKSDDVPVYSVLQHSIVKGAVPMGVSYVSTGNIDKSQYIPGVII EEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHCCCEEEE NDNTINDNDNPQILLRLFVPGKDDADVSVSVVSKTTPGTALTAHVTGGSIRDIPISGLTS ECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEECCCCEEECCCCCCCC SSYFISITSSKPLLASALSSMSFQSGARDFAWYPATHATSADTFIAVPSRGVLALQNTLD CEEEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEECCCCEEEEHHHCC QSQSVKLESLNGFSDSFPSGFVNTSHVFVPKQPEVTNSTVIHLDRSGVATHPVSRGFYRL CCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEE SHKGQVAFSLAFVNSEGIAMYNPPTGDTRPDGITVDVLQ CCCCCEEEEEEEECCCCEEEECCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA