| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572298
Identifier: 28572298
GI number: 28572298
Start: 142512
End: 144908
Strand: Direct
Name: 28572298
Synonym: TW135
Alternate gene names: NA
Gene position: 142512-144908 (Clockwise)
Preceding gene: 28572297
Following gene: 28572299
Centisome position: 15.39
GC content: 45.22
Gene sequence:
>2397_bases ATGCGCTTTCCCCCAGGATACAATCGCGCTCGGGCACTCAATGCTGCGTGTTTGAAATGCCCTGATACTGATTTTTACTG GTTTTTGAACACACGCATTGTCGCGGCCCCAACGGCTCTTGAGTATTTGCTGAATACTATTGAAGTTTCGCCCGGAGCTT CCGTTGCTGCACCAAAAATACTCAATGATACTGGGGTGTTCTTTGACTACGGCCAGTCAATTACAACAGGTGGCCGTGCT GTCCATCTCGTTCAGGACGAGCTTGATCAGGGTCAACATGATGACAAGGTTGATACTATGGGCGCTAATTATGCAGGCAT GCTTGTCCATCGCTCCTGCTTTGAGGCCATAAAAGGTTTCGACCCGGGATTCTCGGAATACGAGCAGGGCCTTGATTTTT GCATACGTGCACGCTTGTCTGGCGCCCGGGTTTCGCTTTCCCCAAGGTCTGTTGTGACACATGTTGGCACCGGACTCAGA TCGTATCGTGTGCAAGAAGGGTATATTCAGAAGCGAACCGGTCAACTCAGACGACAGATTGTTTACGCACCTTTTGTAAA GTCCGTACTCTTATGGTTTTCCCTTATACCCCGCGGGGTGTTGTGGTTTCTTGCAAGCTTATTGACTAGGCGGAGTGCCC TGAAAGAGGCCTGGGCTCACATCAAATTAGCCTTTTTACCAATCTCCCTTGCAAGATCCAGGAAAATTTCTAATCGACAA AACTCACTTAGGGCACTTTCTGTTCTTATGCAAAAACCAAAACGAGAGTTCATGTCTTATGAGAAACTTGATTTTTTCTT CAGGAATGGCCTCGTAATCGTTTTGATTTTTGTATTTATTGGATTTGTTGTATTTCTGCCATTTCTTGCACATCCTGCCT TGTCGGGCGGTAGCCTCTTGCCCATTAATCTGTCTTTTTACCAAATGTGGCGCATGACGGCAGTCTATGTATTCCTCGAT GGGGTGTATCCAGCGGATCCGTTTAACATAATCCCAGCATTGCTGGGAAGCCTAACCTTTTGGGATACGAATTTCTCAAT TCTGCTTTTGTATTTTGTGGCGCTACCCCTTTCGTGCACCGCCGCTTGGCTCTGCGCATCGCGACTGTTATCAAGCCCTC GCACCATAGCCTTTTCAGCTGCCCTTTATTCACTATCTCCATCTCTTTGGTTAGGCTTGTACAACGGTAATTTGCAGGGT ATAGTCGTACATATTTGCTTGCCGTTTTTATGTTTCCTCATGCTGGGGATAAAAACATTCCGGACATTGTCACTCGCATC TCTCTTATTTGCGTTTATTACGGTCGCGTCACCAAGTATTTTTCTTCCGCTTACCGTCTTGGTTTTAATTGTCGCCATCG CAACTGCCACTTTTAGAATGCTGTTTATTGTATTGCCAGTTATTGTGGCTTTTATTCCACTGTTCTTGGTTCAACCATTG CGTGTGAATCTACTTGCCGATCCTGTTTTGTCAAGCACAAATCTCTTCAGTTCCATTTTTGGATTGGGTAACATCTTTAC CACGGCGCATTTGTCTCTGTTCTTACTGGTTTTGCCGATTATTTTTCTTATTCTTATGGGCCTGTGGAAGACTTACTCAA GTTTGCCATTTTTGCTGATAACTTTTGTTGGATTTGTGAATTCGGTTATTTGGGCCGACGTATGGCAGGGACCGAGCTTC AGTCTTGCTTGGCTCGGCATAACCGGTGCTGCCGCTATTGGCTTTACTTCAATTCGCTGCATAAAAAGAATGATTGCCCT TGTATCTGTGGGCGCCCTCGGTGCATTTTTTGTTTATATACCGTACGCTACCAAGATATGGCAAGCTCAATCTCCCGTTG TTTCAACAACTTCCGCTGTTAATTTACCCGCATATGTCCTTGCCGAGGCCAACAGCAATTCCAATATTGGCACCCTTATA GTAGAACCTGTGTCAGAAAAAGAGATCAGGGTGAAAGTTGCCCGAGGTGCAGTTTTTGGATTTGGTTCACAGAATACAAA ACTAATATCTGGAGCAAACCCCCAGTCTTCCGACCTTGCAAATTTGGCTGTTAATCTTGTTATGTCTGGCAATGTTGATA TTGCTGAAGGTATGAAAAGACTAAATCTTGAAATGCTTCTGCTGTCTGGTGATAAATACGGTTTCTCGGCGAATATCAAT GCAAATTCTATGTTTGAGGCAGCTGGAAACACGCCCTTCGGTAAGCTTTGGCGACTGAAGGATCGCTTACCCCCTTTGGG TCAGGCAACTTTTCCGCCCTATTATTGGCTTTCGCCGATTGTTTTTCTTTTACTGTTTTTGGTTGGCGTCTTTGGAAGAT CTTCTAGAAAACCACCGGAAGAAATGGGTATTGACCTAGAGGATCAATTTGCGGAGCCTGGATATGCACTCACATAG
Upstream 100 bases:
>100_bases TAGGTGTCAGACGAAACCTGTTTCCTATATTTTTGTTGTTGACCTAACGGCTAAGCGCCGCAGCCAGGAGACTCTATCGA CTTTTGCCCCCGACGGGATA
Downstream 100 bases:
>100_bases GAATATCTCTGTGTTATCTGCTTGATCAGGATGTATTTGGGATCTCTAAGCAATGAAAATTTTTCCGAAAATACTTAACT GTTTTATTCTGGTTTTGTTA
Product: integral membrane protein
Products: NA
Alternate protein names: Glycosyl Transferase Domain-Containing Protein; Integral Membrane Regulatory Protein; Glycosyltransferase-Like Protein; Glycosyltransferase; Glycosyl Transferase Family 2 Protein; Integral Membrane Glycosyl Transferase; Regulatory Protein; Family 2 Glycosyl Transferase; Glycosyl Transferase Group 2 Family; Group 2 Glycosyl Transferase
Number of amino acids: Translated: 798; Mature: 798
Protein sequence:
>798_residues MRFPPGYNRARALNAACLKCPDTDFYWFLNTRIVAAPTALEYLLNTIEVSPGASVAAPKILNDTGVFFDYGQSITTGGRA VHLVQDELDQGQHDDKVDTMGANYAGMLVHRSCFEAIKGFDPGFSEYEQGLDFCIRARLSGARVSLSPRSVVTHVGTGLR SYRVQEGYIQKRTGQLRRQIVYAPFVKSVLLWFSLIPRGVLWFLASLLTRRSALKEAWAHIKLAFLPISLARSRKISNRQ NSLRALSVLMQKPKREFMSYEKLDFFFRNGLVIVLIFVFIGFVVFLPFLAHPALSGGSLLPINLSFYQMWRMTAVYVFLD GVYPADPFNIIPALLGSLTFWDTNFSILLLYFVALPLSCTAAWLCASRLLSSPRTIAFSAALYSLSPSLWLGLYNGNLQG IVVHICLPFLCFLMLGIKTFRTLSLASLLFAFITVASPSIFLPLTVLVLIVAIATATFRMLFIVLPVIVAFIPLFLVQPL RVNLLADPVLSSTNLFSSIFGLGNIFTTAHLSLFLLVLPIIFLILMGLWKTYSSLPFLLITFVGFVNSVIWADVWQGPSF SLAWLGITGAAAIGFTSIRCIKRMIALVSVGALGAFFVYIPYATKIWQAQSPVVSTTSAVNLPAYVLAEANSNSNIGTLI VEPVSEKEIRVKVARGAVFGFGSQNTKLISGANPQSSDLANLAVNLVMSGNVDIAEGMKRLNLEMLLLSGDKYGFSANIN ANSMFEAAGNTPFGKLWRLKDRLPPLGQATFPPYYWLSPIVFLLLFLVGVFGRSSRKPPEEMGIDLEDQFAEPGYALT
Sequences:
>Translated_798_residues MRFPPGYNRARALNAACLKCPDTDFYWFLNTRIVAAPTALEYLLNTIEVSPGASVAAPKILNDTGVFFDYGQSITTGGRA VHLVQDELDQGQHDDKVDTMGANYAGMLVHRSCFEAIKGFDPGFSEYEQGLDFCIRARLSGARVSLSPRSVVTHVGTGLR SYRVQEGYIQKRTGQLRRQIVYAPFVKSVLLWFSLIPRGVLWFLASLLTRRSALKEAWAHIKLAFLPISLARSRKISNRQ NSLRALSVLMQKPKREFMSYEKLDFFFRNGLVIVLIFVFIGFVVFLPFLAHPALSGGSLLPINLSFYQMWRMTAVYVFLD GVYPADPFNIIPALLGSLTFWDTNFSILLLYFVALPLSCTAAWLCASRLLSSPRTIAFSAALYSLSPSLWLGLYNGNLQG IVVHICLPFLCFLMLGIKTFRTLSLASLLFAFITVASPSIFLPLTVLVLIVAIATATFRMLFIVLPVIVAFIPLFLVQPL RVNLLADPVLSSTNLFSSIFGLGNIFTTAHLSLFLLVLPIIFLILMGLWKTYSSLPFLLITFVGFVNSVIWADVWQGPSF SLAWLGITGAAAIGFTSIRCIKRMIALVSVGALGAFFVYIPYATKIWQAQSPVVSTTSAVNLPAYVLAEANSNSNIGTLI VEPVSEKEIRVKVARGAVFGFGSQNTKLISGANPQSSDLANLAVNLVMSGNVDIAEGMKRLNLEMLLLSGDKYGFSANIN ANSMFEAAGNTPFGKLWRLKDRLPPLGQATFPPYYWLSPIVFLLLFLVGVFGRSSRKPPEEMGIDLEDQFAEPGYALT >Mature_798_residues MRFPPGYNRARALNAACLKCPDTDFYWFLNTRIVAAPTALEYLLNTIEVSPGASVAAPKILNDTGVFFDYGQSITTGGRA VHLVQDELDQGQHDDKVDTMGANYAGMLVHRSCFEAIKGFDPGFSEYEQGLDFCIRARLSGARVSLSPRSVVTHVGTGLR SYRVQEGYIQKRTGQLRRQIVYAPFVKSVLLWFSLIPRGVLWFLASLLTRRSALKEAWAHIKLAFLPISLARSRKISNRQ NSLRALSVLMQKPKREFMSYEKLDFFFRNGLVIVLIFVFIGFVVFLPFLAHPALSGGSLLPINLSFYQMWRMTAVYVFLD GVYPADPFNIIPALLGSLTFWDTNFSILLLYFVALPLSCTAAWLCASRLLSSPRTIAFSAALYSLSPSLWLGLYNGNLQG IVVHICLPFLCFLMLGIKTFRTLSLASLLFAFITVASPSIFLPLTVLVLIVAIATATFRMLFIVLPVIVAFIPLFLVQPL RVNLLADPVLSSTNLFSSIFGLGNIFTTAHLSLFLLVLPIIFLILMGLWKTYSSLPFLLITFVGFVNSVIWADVWQGPSF SLAWLGITGAAAIGFTSIRCIKRMIALVSVGALGAFFVYIPYATKIWQAQSPVVSTTSAVNLPAYVLAEANSNSNIGTLI VEPVSEKEIRVKVARGAVFGFGSQNTKLISGANPQSSDLANLAVNLVMSGNVDIAEGMKRLNLEMLLLSGDKYGFSANIN ANSMFEAAGNTPFGKLWRLKDRLPPLGQATFPPYYWLSPIVFLLLFLVGVFGRSSRKPPEEMGIDLEDQFAEPGYALT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88014; Mature: 88014
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFPPGYNRARALNAACLKCPDTDFYWFLNTRIVAAPTALEYLLNTIEVSPGASVAAPKI CCCCCCCCHHHHHHHHHHCCCCCCEEEEECCEEEECHHHHHHHHHHHCCCCCCCCCCCCC LNDTGVFFDYGQSITTGGRAVHLVQDELDQGQHDDKVDTMGANYAGMLVHRSCFEAIKGF CCCCCCEEECCCCCCCCCCEEEEEHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCC DPGFSEYEQGLDFCIRARLSGARVSLSPRSVVTHVGTGLRSYRVQEGYIQKRTGQLRRQI CCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH VYAPFVKSVLLWFSLIPRGVLWFLASLLTRRSALKEAWAHIKLAFLPISLARSRKISNRQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHCCHH NSLRALSVLMQKPKREFMSYEKLDFFFRNGLVIVLIFVFIGFVVFLPFLAHPALSGGSLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE PINLSFYQMWRMTAVYVFLDGVYPADPFNIIPALLGSLTFWDTNFSILLLYFVALPLSCT EEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHH AAWLCASRLLSSPRTIAFSAALYSLSPSLWLGLYNGNLQGIVVHICLPFLCFLMLGIKTF HHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH RTLSLASLLFAFITVASPSIFLPLTVLVLIVAIATATFRMLFIVLPVIVAFIPLFLVQPL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH RVNLLADPVLSSTNLFSSIFGLGNIFTTAHLSLFLLVLPIIFLILMGLWKTYSSLPFLLI HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH TFVGFVNSVIWADVWQGPSFSLAWLGITGAAAIGFTSIRCIKRMIALVSVGALGAFFVYI HHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PYATKIWQAQSPVVSTTSAVNLPAYVLAEANSNSNIGTLIVEPVSEKEIRVKVARGAVFG HHHHHHHCCCCCCEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCEEEE FGSQNTKLISGANPQSSDLANLAVNLVMSGNVDIAEGMKRLNLEMLLLSGDKYGFSANIN CCCCCCEEEECCCCCCCHHHHHHEEEEEECCCCHHHHHHHCCEEEEEEECCCCCEEECCC ANSMFEAAGNTPFGKLWRLKDRLPPLGQATFPPYYWLSPIVFLLLFLVGVFGRSSRKPPE CCHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH EMGIDLEDQFAEPGYALT HHCCCCHHHHCCCCCCCC >Mature Secondary Structure MRFPPGYNRARALNAACLKCPDTDFYWFLNTRIVAAPTALEYLLNTIEVSPGASVAAPKI CCCCCCCCHHHHHHHHHHCCCCCCEEEEECCEEEECHHHHHHHHHHHCCCCCCCCCCCCC LNDTGVFFDYGQSITTGGRAVHLVQDELDQGQHDDKVDTMGANYAGMLVHRSCFEAIKGF CCCCCCEEECCCCCCCCCCEEEEEHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCC DPGFSEYEQGLDFCIRARLSGARVSLSPRSVVTHVGTGLRSYRVQEGYIQKRTGQLRRQI CCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH VYAPFVKSVLLWFSLIPRGVLWFLASLLTRRSALKEAWAHIKLAFLPISLARSRKISNRQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHCCHH NSLRALSVLMQKPKREFMSYEKLDFFFRNGLVIVLIFVFIGFVVFLPFLAHPALSGGSLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE PINLSFYQMWRMTAVYVFLDGVYPADPFNIIPALLGSLTFWDTNFSILLLYFVALPLSCT EEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHH AAWLCASRLLSSPRTIAFSAALYSLSPSLWLGLYNGNLQGIVVHICLPFLCFLMLGIKTF HHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH RTLSLASLLFAFITVASPSIFLPLTVLVLIVAIATATFRMLFIVLPVIVAFIPLFLVQPL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH RVNLLADPVLSSTNLFSSIFGLGNIFTTAHLSLFLLVLPIIFLILMGLWKTYSSLPFLLI HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH TFVGFVNSVIWADVWQGPSFSLAWLGITGAAAIGFTSIRCIKRMIALVSVGALGAFFVYI HHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PYATKIWQAQSPVVSTTSAVNLPAYVLAEANSNSNIGTLIVEPVSEKEIRVKVARGAVFG HHHHHHHCCCCCCEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCEEEE FGSQNTKLISGANPQSSDLANLAVNLVMSGNVDIAEGMKRLNLEMLLLSGDKYGFSANIN CCCCCCEEEECCCCCCCHHHHHHEEEEEECCCCHHHHHHHCCEEEEEEECCCCCEEECCC ANSMFEAAGNTPFGKLWRLKDRLPPLGQATFPPYYWLSPIVFLLLFLVGVFGRSSRKPPE CCHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH EMGIDLEDQFAEPGYALT HHCCCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA