Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572298

Identifier: 28572298

GI number: 28572298

Start: 142512

End: 144908

Strand: Direct

Name: 28572298

Synonym: TW135

Alternate gene names: NA

Gene position: 142512-144908 (Clockwise)

Preceding gene: 28572297

Following gene: 28572299

Centisome position: 15.39

GC content: 45.22

Gene sequence:

>2397_bases
ATGCGCTTTCCCCCAGGATACAATCGCGCTCGGGCACTCAATGCTGCGTGTTTGAAATGCCCTGATACTGATTTTTACTG
GTTTTTGAACACACGCATTGTCGCGGCCCCAACGGCTCTTGAGTATTTGCTGAATACTATTGAAGTTTCGCCCGGAGCTT
CCGTTGCTGCACCAAAAATACTCAATGATACTGGGGTGTTCTTTGACTACGGCCAGTCAATTACAACAGGTGGCCGTGCT
GTCCATCTCGTTCAGGACGAGCTTGATCAGGGTCAACATGATGACAAGGTTGATACTATGGGCGCTAATTATGCAGGCAT
GCTTGTCCATCGCTCCTGCTTTGAGGCCATAAAAGGTTTCGACCCGGGATTCTCGGAATACGAGCAGGGCCTTGATTTTT
GCATACGTGCACGCTTGTCTGGCGCCCGGGTTTCGCTTTCCCCAAGGTCTGTTGTGACACATGTTGGCACCGGACTCAGA
TCGTATCGTGTGCAAGAAGGGTATATTCAGAAGCGAACCGGTCAACTCAGACGACAGATTGTTTACGCACCTTTTGTAAA
GTCCGTACTCTTATGGTTTTCCCTTATACCCCGCGGGGTGTTGTGGTTTCTTGCAAGCTTATTGACTAGGCGGAGTGCCC
TGAAAGAGGCCTGGGCTCACATCAAATTAGCCTTTTTACCAATCTCCCTTGCAAGATCCAGGAAAATTTCTAATCGACAA
AACTCACTTAGGGCACTTTCTGTTCTTATGCAAAAACCAAAACGAGAGTTCATGTCTTATGAGAAACTTGATTTTTTCTT
CAGGAATGGCCTCGTAATCGTTTTGATTTTTGTATTTATTGGATTTGTTGTATTTCTGCCATTTCTTGCACATCCTGCCT
TGTCGGGCGGTAGCCTCTTGCCCATTAATCTGTCTTTTTACCAAATGTGGCGCATGACGGCAGTCTATGTATTCCTCGAT
GGGGTGTATCCAGCGGATCCGTTTAACATAATCCCAGCATTGCTGGGAAGCCTAACCTTTTGGGATACGAATTTCTCAAT
TCTGCTTTTGTATTTTGTGGCGCTACCCCTTTCGTGCACCGCCGCTTGGCTCTGCGCATCGCGACTGTTATCAAGCCCTC
GCACCATAGCCTTTTCAGCTGCCCTTTATTCACTATCTCCATCTCTTTGGTTAGGCTTGTACAACGGTAATTTGCAGGGT
ATAGTCGTACATATTTGCTTGCCGTTTTTATGTTTCCTCATGCTGGGGATAAAAACATTCCGGACATTGTCACTCGCATC
TCTCTTATTTGCGTTTATTACGGTCGCGTCACCAAGTATTTTTCTTCCGCTTACCGTCTTGGTTTTAATTGTCGCCATCG
CAACTGCCACTTTTAGAATGCTGTTTATTGTATTGCCAGTTATTGTGGCTTTTATTCCACTGTTCTTGGTTCAACCATTG
CGTGTGAATCTACTTGCCGATCCTGTTTTGTCAAGCACAAATCTCTTCAGTTCCATTTTTGGATTGGGTAACATCTTTAC
CACGGCGCATTTGTCTCTGTTCTTACTGGTTTTGCCGATTATTTTTCTTATTCTTATGGGCCTGTGGAAGACTTACTCAA
GTTTGCCATTTTTGCTGATAACTTTTGTTGGATTTGTGAATTCGGTTATTTGGGCCGACGTATGGCAGGGACCGAGCTTC
AGTCTTGCTTGGCTCGGCATAACCGGTGCTGCCGCTATTGGCTTTACTTCAATTCGCTGCATAAAAAGAATGATTGCCCT
TGTATCTGTGGGCGCCCTCGGTGCATTTTTTGTTTATATACCGTACGCTACCAAGATATGGCAAGCTCAATCTCCCGTTG
TTTCAACAACTTCCGCTGTTAATTTACCCGCATATGTCCTTGCCGAGGCCAACAGCAATTCCAATATTGGCACCCTTATA
GTAGAACCTGTGTCAGAAAAAGAGATCAGGGTGAAAGTTGCCCGAGGTGCAGTTTTTGGATTTGGTTCACAGAATACAAA
ACTAATATCTGGAGCAAACCCCCAGTCTTCCGACCTTGCAAATTTGGCTGTTAATCTTGTTATGTCTGGCAATGTTGATA
TTGCTGAAGGTATGAAAAGACTAAATCTTGAAATGCTTCTGCTGTCTGGTGATAAATACGGTTTCTCGGCGAATATCAAT
GCAAATTCTATGTTTGAGGCAGCTGGAAACACGCCCTTCGGTAAGCTTTGGCGACTGAAGGATCGCTTACCCCCTTTGGG
TCAGGCAACTTTTCCGCCCTATTATTGGCTTTCGCCGATTGTTTTTCTTTTACTGTTTTTGGTTGGCGTCTTTGGAAGAT
CTTCTAGAAAACCACCGGAAGAAATGGGTATTGACCTAGAGGATCAATTTGCGGAGCCTGGATATGCACTCACATAG

Upstream 100 bases:

>100_bases
TAGGTGTCAGACGAAACCTGTTTCCTATATTTTTGTTGTTGACCTAACGGCTAAGCGCCGCAGCCAGGAGACTCTATCGA
CTTTTGCCCCCGACGGGATA

Downstream 100 bases:

>100_bases
GAATATCTCTGTGTTATCTGCTTGATCAGGATGTATTTGGGATCTCTAAGCAATGAAAATTTTTCCGAAAATACTTAACT
GTTTTATTCTGGTTTTGTTA

Product: integral membrane protein

Products: NA

Alternate protein names: Glycosyl Transferase Domain-Containing Protein; Integral Membrane Regulatory Protein; Glycosyltransferase-Like Protein; Glycosyltransferase; Glycosyl Transferase Family 2 Protein; Integral Membrane Glycosyl Transferase; Regulatory Protein; Family 2 Glycosyl Transferase; Glycosyl Transferase Group 2 Family; Group 2 Glycosyl Transferase

Number of amino acids: Translated: 798; Mature: 798

Protein sequence:

>798_residues
MRFPPGYNRARALNAACLKCPDTDFYWFLNTRIVAAPTALEYLLNTIEVSPGASVAAPKILNDTGVFFDYGQSITTGGRA
VHLVQDELDQGQHDDKVDTMGANYAGMLVHRSCFEAIKGFDPGFSEYEQGLDFCIRARLSGARVSLSPRSVVTHVGTGLR
SYRVQEGYIQKRTGQLRRQIVYAPFVKSVLLWFSLIPRGVLWFLASLLTRRSALKEAWAHIKLAFLPISLARSRKISNRQ
NSLRALSVLMQKPKREFMSYEKLDFFFRNGLVIVLIFVFIGFVVFLPFLAHPALSGGSLLPINLSFYQMWRMTAVYVFLD
GVYPADPFNIIPALLGSLTFWDTNFSILLLYFVALPLSCTAAWLCASRLLSSPRTIAFSAALYSLSPSLWLGLYNGNLQG
IVVHICLPFLCFLMLGIKTFRTLSLASLLFAFITVASPSIFLPLTVLVLIVAIATATFRMLFIVLPVIVAFIPLFLVQPL
RVNLLADPVLSSTNLFSSIFGLGNIFTTAHLSLFLLVLPIIFLILMGLWKTYSSLPFLLITFVGFVNSVIWADVWQGPSF
SLAWLGITGAAAIGFTSIRCIKRMIALVSVGALGAFFVYIPYATKIWQAQSPVVSTTSAVNLPAYVLAEANSNSNIGTLI
VEPVSEKEIRVKVARGAVFGFGSQNTKLISGANPQSSDLANLAVNLVMSGNVDIAEGMKRLNLEMLLLSGDKYGFSANIN
ANSMFEAAGNTPFGKLWRLKDRLPPLGQATFPPYYWLSPIVFLLLFLVGVFGRSSRKPPEEMGIDLEDQFAEPGYALT

Sequences:

>Translated_798_residues
MRFPPGYNRARALNAACLKCPDTDFYWFLNTRIVAAPTALEYLLNTIEVSPGASVAAPKILNDTGVFFDYGQSITTGGRA
VHLVQDELDQGQHDDKVDTMGANYAGMLVHRSCFEAIKGFDPGFSEYEQGLDFCIRARLSGARVSLSPRSVVTHVGTGLR
SYRVQEGYIQKRTGQLRRQIVYAPFVKSVLLWFSLIPRGVLWFLASLLTRRSALKEAWAHIKLAFLPISLARSRKISNRQ
NSLRALSVLMQKPKREFMSYEKLDFFFRNGLVIVLIFVFIGFVVFLPFLAHPALSGGSLLPINLSFYQMWRMTAVYVFLD
GVYPADPFNIIPALLGSLTFWDTNFSILLLYFVALPLSCTAAWLCASRLLSSPRTIAFSAALYSLSPSLWLGLYNGNLQG
IVVHICLPFLCFLMLGIKTFRTLSLASLLFAFITVASPSIFLPLTVLVLIVAIATATFRMLFIVLPVIVAFIPLFLVQPL
RVNLLADPVLSSTNLFSSIFGLGNIFTTAHLSLFLLVLPIIFLILMGLWKTYSSLPFLLITFVGFVNSVIWADVWQGPSF
SLAWLGITGAAAIGFTSIRCIKRMIALVSVGALGAFFVYIPYATKIWQAQSPVVSTTSAVNLPAYVLAEANSNSNIGTLI
VEPVSEKEIRVKVARGAVFGFGSQNTKLISGANPQSSDLANLAVNLVMSGNVDIAEGMKRLNLEMLLLSGDKYGFSANIN
ANSMFEAAGNTPFGKLWRLKDRLPPLGQATFPPYYWLSPIVFLLLFLVGVFGRSSRKPPEEMGIDLEDQFAEPGYALT
>Mature_798_residues
MRFPPGYNRARALNAACLKCPDTDFYWFLNTRIVAAPTALEYLLNTIEVSPGASVAAPKILNDTGVFFDYGQSITTGGRA
VHLVQDELDQGQHDDKVDTMGANYAGMLVHRSCFEAIKGFDPGFSEYEQGLDFCIRARLSGARVSLSPRSVVTHVGTGLR
SYRVQEGYIQKRTGQLRRQIVYAPFVKSVLLWFSLIPRGVLWFLASLLTRRSALKEAWAHIKLAFLPISLARSRKISNRQ
NSLRALSVLMQKPKREFMSYEKLDFFFRNGLVIVLIFVFIGFVVFLPFLAHPALSGGSLLPINLSFYQMWRMTAVYVFLD
GVYPADPFNIIPALLGSLTFWDTNFSILLLYFVALPLSCTAAWLCASRLLSSPRTIAFSAALYSLSPSLWLGLYNGNLQG
IVVHICLPFLCFLMLGIKTFRTLSLASLLFAFITVASPSIFLPLTVLVLIVAIATATFRMLFIVLPVIVAFIPLFLVQPL
RVNLLADPVLSSTNLFSSIFGLGNIFTTAHLSLFLLVLPIIFLILMGLWKTYSSLPFLLITFVGFVNSVIWADVWQGPSF
SLAWLGITGAAAIGFTSIRCIKRMIALVSVGALGAFFVYIPYATKIWQAQSPVVSTTSAVNLPAYVLAEANSNSNIGTLI
VEPVSEKEIRVKVARGAVFGFGSQNTKLISGANPQSSDLANLAVNLVMSGNVDIAEGMKRLNLEMLLLSGDKYGFSANIN
ANSMFEAAGNTPFGKLWRLKDRLPPLGQATFPPYYWLSPIVFLLLFLVGVFGRSSRKPPEEMGIDLEDQFAEPGYALT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 88014; Mature: 88014

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFPPGYNRARALNAACLKCPDTDFYWFLNTRIVAAPTALEYLLNTIEVSPGASVAAPKI
CCCCCCCCHHHHHHHHHHCCCCCCEEEEECCEEEECHHHHHHHHHHHCCCCCCCCCCCCC
LNDTGVFFDYGQSITTGGRAVHLVQDELDQGQHDDKVDTMGANYAGMLVHRSCFEAIKGF
CCCCCCEEECCCCCCCCCCEEEEEHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCC
DPGFSEYEQGLDFCIRARLSGARVSLSPRSVVTHVGTGLRSYRVQEGYIQKRTGQLRRQI
CCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VYAPFVKSVLLWFSLIPRGVLWFLASLLTRRSALKEAWAHIKLAFLPISLARSRKISNRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHCCHH
NSLRALSVLMQKPKREFMSYEKLDFFFRNGLVIVLIFVFIGFVVFLPFLAHPALSGGSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
PINLSFYQMWRMTAVYVFLDGVYPADPFNIIPALLGSLTFWDTNFSILLLYFVALPLSCT
EEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHH
AAWLCASRLLSSPRTIAFSAALYSLSPSLWLGLYNGNLQGIVVHICLPFLCFLMLGIKTF
HHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
RTLSLASLLFAFITVASPSIFLPLTVLVLIVAIATATFRMLFIVLPVIVAFIPLFLVQPL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
RVNLLADPVLSSTNLFSSIFGLGNIFTTAHLSLFLLVLPIIFLILMGLWKTYSSLPFLLI
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
TFVGFVNSVIWADVWQGPSFSLAWLGITGAAAIGFTSIRCIKRMIALVSVGALGAFFVYI
HHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PYATKIWQAQSPVVSTTSAVNLPAYVLAEANSNSNIGTLIVEPVSEKEIRVKVARGAVFG
HHHHHHHCCCCCCEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCEEEE
FGSQNTKLISGANPQSSDLANLAVNLVMSGNVDIAEGMKRLNLEMLLLSGDKYGFSANIN
CCCCCCEEEECCCCCCCHHHHHHEEEEEECCCCHHHHHHHCCEEEEEEECCCCCEEECCC
ANSMFEAAGNTPFGKLWRLKDRLPPLGQATFPPYYWLSPIVFLLLFLVGVFGRSSRKPPE
CCHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
EMGIDLEDQFAEPGYALT
HHCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MRFPPGYNRARALNAACLKCPDTDFYWFLNTRIVAAPTALEYLLNTIEVSPGASVAAPKI
CCCCCCCCHHHHHHHHHHCCCCCCEEEEECCEEEECHHHHHHHHHHHCCCCCCCCCCCCC
LNDTGVFFDYGQSITTGGRAVHLVQDELDQGQHDDKVDTMGANYAGMLVHRSCFEAIKGF
CCCCCCEEECCCCCCCCCCEEEEEHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCC
DPGFSEYEQGLDFCIRARLSGARVSLSPRSVVTHVGTGLRSYRVQEGYIQKRTGQLRRQI
CCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VYAPFVKSVLLWFSLIPRGVLWFLASLLTRRSALKEAWAHIKLAFLPISLARSRKISNRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHCCHH
NSLRALSVLMQKPKREFMSYEKLDFFFRNGLVIVLIFVFIGFVVFLPFLAHPALSGGSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
PINLSFYQMWRMTAVYVFLDGVYPADPFNIIPALLGSLTFWDTNFSILLLYFVALPLSCT
EEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHH
AAWLCASRLLSSPRTIAFSAALYSLSPSLWLGLYNGNLQGIVVHICLPFLCFLMLGIKTF
HHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
RTLSLASLLFAFITVASPSIFLPLTVLVLIVAIATATFRMLFIVLPVIVAFIPLFLVQPL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
RVNLLADPVLSSTNLFSSIFGLGNIFTTAHLSLFLLVLPIIFLILMGLWKTYSSLPFLLI
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
TFVGFVNSVIWADVWQGPSFSLAWLGITGAAAIGFTSIRCIKRMIALVSVGALGAFFVYI
HHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PYATKIWQAQSPVVSTTSAVNLPAYVLAEANSNSNIGTLIVEPVSEKEIRVKVARGAVFG
HHHHHHHCCCCCCEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCEEEE
FGSQNTKLISGANPQSSDLANLAVNLVMSGNVDIAEGMKRLNLEMLLLSGDKYGFSANIN
CCCCCCEEEECCCCCCCHHHHHHEEEEEECCCCHHHHHHHCCEEEEEEECCCCCEEECCC
ANSMFEAAGNTPFGKLWRLKDRLPPLGQATFPPYYWLSPIVFLLLFLVGVFGRSSRKPPE
CCHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
EMGIDLEDQFAEPGYALT
HHCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA