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The map label for this gene is ssb1

Identifier: 28572282

GI number: 28572282

Start: 125457

End: 126017

Strand: Reverse

Name: ssb1

Synonym: TW116

Alternate gene names: 28572282

Gene position: 126017-125457 (Counterclockwise)

Preceding gene: 28572283

Following gene: 28572281

Centisome position: 13.61

GC content: 51.34

Gene sequence:

>561_bases
GTGGATGCAACCGTTACCGTGGTGGGCAATCTAACAGCCGATCCGGAATTGAGGTACACCGCAACTGGGGCGGCTGTCGT
CAACATGACCATAGCAAGCACCCCTCGCATGTACGACAGACAGTCCGGCGAGTGGAAGGATGGGGAACCTCTTTTTCTTC
GTGGCATTCTGTGGAGAGAGTATGCCATTAATGCCGCGGCCTCCCTTGCGAAGGGAATGCGAGTTGTAGCTGTCGGTAAG
CTAAAGCAGCGAAACTATGAAACGAGAGAGGGTGATCGCAGAACTTCGGTTGAGCTTGAAATTGATGAGATTGGCCCGAC
TTTGCGGTACGCAACAGCGAAATGCTCGAGGGCCACGCAGGCTGGGCATGGTGTGTCTCCTGATCCTTGGGCTGACTCTC
AGACTGGTCAGGGTATTGACTCTCACACCACACGTAGTGAGGAAATTACTGAAAACGCGAAGAATGGCGAGGGTGCCGGG
AAAAACGAGTTAAATAAAAAAGTTCTGGTGGGAGATAATGTATCTTATGAGGATTTTGACAGTGATGAAGTTCCTTTCTA
G

Upstream 100 bases:

>100_bases
TCTAGCAAATGCCGGGTCGATCGCGGAGATTGGCAGGCAGATGCGTCTGACAGAGGATGTTATACGTACTAAACTTTTGC
GAGTCGGACGGAAATAAAGG

Downstream 100 bases:

>100_bases
TTGTTGGTTGATCCATGGGATATAGAGCAAAAGGTCGTCGACAGCCTAAGGCTGACAGTGTTGTTGCGCCGCCGAAACGC
GTGAGTATCAAAGGTCTTGA

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB 1; Helix-destabilizing protein 1

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MDATVTVVGNLTADPELRYTATGAAVVNMTIASTPRMYDRQSGEWKDGEPLFLRGILWREYAINAAASLAKGMRVVAVGK
LKQRNYETREGDRRTSVELEIDEIGPTLRYATAKCSRATQAGHGVSPDPWADSQTGQGIDSHTTRSEEITENAKNGEGAG
KNELNKKVLVGDNVSYEDFDSDEVPF

Sequences:

>Translated_186_residues
MDATVTVVGNLTADPELRYTATGAAVVNMTIASTPRMYDRQSGEWKDGEPLFLRGILWREYAINAAASLAKGMRVVAVGK
LKQRNYETREGDRRTSVELEIDEIGPTLRYATAKCSRATQAGHGVSPDPWADSQTGQGIDSHTTRSEEITENAKNGEGAG
KNELNKKVLVGDNVSYEDFDSDEVPF
>Mature_186_residues
MDATVTVVGNLTADPELRYTATGAAVVNMTIASTPRMYDRQSGEWKDGEPLFLRGILWREYAINAAASLAKGMRVVAVGK
LKQRNYETREGDRRTSVELEIDEIGPTLRYATAKCSRATQAGHGVSPDPWADSQTGQGIDSHTTRSEEITENAKNGEGAG
KNELNKKVLVGDNVSYEDFDSDEVPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain

Homologues:

None

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SSB1_TROW8 (Q83NU2)

Other databases:

- EMBL:   BX251410
- RefSeq:   NP_789062.1
- ProteinModelPortal:   Q83NU2
- SMR:   Q83NU2
- STRING:   Q83NU2
- GeneID:   1064414
- GenomeReviews:   BX072543_GR
- KEGG:   tws:TW116
- eggNOG:   COG0629
- HOGENOM:   HBG755544
- OMA:   WREYAIN
- ProtClustDB:   PRK07772
- BioCyc:   TWHI218496:TW0107-MONOMER
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10302
- TIGRFAMs:   TIGR00621

Pfam domain/function: PF00436 SSB; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 20314; Mature: 20314

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDATVTVVGNLTADPELRYTATGAAVVNMTIASTPRMYDRQSGEWKDGEPLFLRGILWRE
CCCEEEEEECCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHH
YAINAAASLAKGMRVVAVGKLKQRNYETREGDRRTSVELEIDEIGPTLRYATAKCSRATQ
HHHHHHHHHHCCCEEEEEECHHHCCCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHH
AGHGVSPDPWADSQTGQGIDSHTTRSEEITENAKNGEGAGKNELNKKVLVGDNVSYEDFD
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCC
SDEVPF
CCCCCC
>Mature Secondary Structure
MDATVTVVGNLTADPELRYTATGAAVVNMTIASTPRMYDRQSGEWKDGEPLFLRGILWRE
CCCEEEEEECCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHH
YAINAAASLAKGMRVVAVGKLKQRNYETREGDRRTSVELEIDEIGPTLRYATAKCSRATQ
HHHHHHHHHHCCCEEEEEECHHHCCCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHH
AGHGVSPDPWADSQTGQGIDSHTTRSEEITENAKNGEGAGKNELNKKVLVGDNVSYEDFD
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCC
SDEVPF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12606174