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The map label for this gene is rpsF

Identifier: 28572283

GI number: 28572283

Start: 126021

End: 126323

Strand: Reverse

Name: rpsF

Synonym: TW117

Alternate gene names: 28572283

Gene position: 126323-126021 (Counterclockwise)

Preceding gene: 28572284

Following gene: 28572282

Centisome position: 13.64

GC content: 50.17

Gene sequence:

>303_bases
TTGTTGGGATCCCCTTTGCGTGAATACGAACTGCTGGTCAGCCTTGGGTCTGAATTTGAGCCTGAGGCCGAGTCTCGTGT
TAGAAGCCTCTTTACTCCAGTCGAACCCGAAGGGGTTACAGTAAAGCATCTTGATGTTCTGGGGGTACGGAAATTTGCTT
ACGAGATAAAGGGGCGCAACGATGGGGTTTGTGTTGTTGTCAGGCTTCTAGCAAATGCCGGGTCGATCGCGGAGATTGGC
AGGCAGATGCGTCTGACAGAGGATGTTATACGTACTAAACTTTTGCGAGTCGGACGGAAATAA

Upstream 100 bases:

>100_bases
AATATGGTGTATCGAAAGCACCATTTTGCATACAGTAAGGTGTGCGCTAAAATGGCCTCACTCCGTGCGGTCGCGGAGTT
GCTTCTTCTTCGGTTTTTGT

Downstream 100 bases:

>100_bases
AGGGTGGATGCAACCGTTACCGTGGTGGGCAATCTAACAGCCGATCCGGAATTGAGGTACACCGCAACTGGGGCGGCTGT
CGTCAACATGACCATAGCAA

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 100

Protein sequence:

>100_residues
MLGSPLREYELLVSLGSEFEPEAESRVRSLFTPVEPEGVTVKHLDVLGVRKFAYEIKGRNDGVCVVVRLLANAGSIAEIG
RQMRLTEDVIRTKLLRVGRK

Sequences:

>Translated_100_residues
MLGSPLREYELLVSLGSEFEPEAESRVRSLFTPVEPEGVTVKHLDVLGVRKFAYEIKGRNDGVCVVVRLLANAGSIAEIG
RQMRLTEDVIRTKLLRVGRK
>Mature_100_residues
MLGSPLREYELLVSLGSEFEPEAESRVRSLFTPVEPEGVTVKHLDVLGVRKFAYEIKGRNDGVCVVVRLLANAGSIAEIG
RQMRLTEDVIRTKLLRVGRK

Specific function: Binds together with S18 to 16S ribosomal RNA

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6_TROW8 (Q83IC0)

Other databases:

- EMBL:   BX251410
- RefSeq:   NP_789063.1
- ProteinModelPortal:   Q83IC0
- STRING:   Q83IC0
- GeneID:   1064415
- GenomeReviews:   BX072543_GR
- KEGG:   tws:TW117
- HOGENOM:   HBG747554
- OMA:   PLREYEL
- ProtClustDB:   PRK00453
- BioCyc:   TWHI218496:TW0108-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00360
- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717
- Gene3D:   G3DSA:3.30.70.60

Pfam domain/function: PF01250 Ribosomal_S6; SSF54995 Ribosomal_S6

EC number: NA

Molecular weight: Translated: 11166; Mature: 11166

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS01048 RIBOSOMAL_S6

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGSPLREYELLVSLGSEFEPEAESRVRSLFTPVEPEGVTVKHLDVLGVRKFAYEIKGRN
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCC
DGVCVVVRLLANAGSIAEIGRQMRLTEDVIRTKLLRVGRK
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLGSPLREYELLVSLGSEFEPEAESRVRSLFTPVEPEGVTVKHLDVLGVRKFAYEIKGRN
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCC
DGVCVVVRLLANAGSIAEIGRQMRLTEDVIRTKLLRVGRK
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12606174