| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572262
Identifier: 28572262
GI number: 28572262
Start: 95180
End: 95521
Strand: Reverse
Name: 28572262
Synonym: TW095
Alternate gene names: NA
Gene position: 95521-95180 (Counterclockwise)
Preceding gene: 28572264
Following gene: 28572251
Centisome position: 10.32
GC content: 42.98
Gene sequence:
>342_bases ATGAAGTCAATGAATAAAAAACTTGCAGTATTTCTGCTAGCACGAGATCTGAGTTTTGTTCTGTCTGCGACAATCCTTGA AGTTTGGTGTTTATCCTCAGTCACCTGGCCCGTGAACGCAATATTTGGTGTTGTACTGCCGATTGTCCTGGGTCTGGGGT GGGCGTGTATCTTATCGACATCTCCAGCAATTTCAGCAAGTATATACCTTCGCTCAATCGTGTATCTCGTGGTTTCACTG CTTGCAGCTCTAAGTCTAATAGATTTTCGGTCTATTGGTCTTGCCGTTGCACATCTTGTATTAGCATCGTTTATCGGTTT TGTGCTTGTCTTGCTTGATTAA
Upstream 100 bases:
>100_bases ATGGCTGAAGCGGGGATCATTTCTCCGACTACCGACAGAAAAACCCCTGCGGACAAAACAATCAACAACAGCAAAATCGT CTATCCTCGTTTAAGCGAGT
Downstream 100 bases:
>100_bases GCTACTAAATAAGGGGCACGTTGCATGTTTTTGTCTTCAGAAATGGTCCAGAGAAACACTGTGGGGCAAAACATTCAATG CGCAAAATGCCTCTTGCCGG
Product: integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 113; Mature: 113
Protein sequence:
>113_residues MKSMNKKLAVFLLARDLSFVLSATILEVWCLSSVTWPVNAIFGVVLPIVLGLGWACILSTSPAISASIYLRSIVYLVVSL LAALSLIDFRSIGLAVAHLVLASFIGFVLVLLD
Sequences:
>Translated_113_residues MKSMNKKLAVFLLARDLSFVLSATILEVWCLSSVTWPVNAIFGVVLPIVLGLGWACILSTSPAISASIYLRSIVYLVVSL LAALSLIDFRSIGLAVAHLVLASFIGFVLVLLD >Mature_113_residues MKSMNKKLAVFLLARDLSFVLSATILEVWCLSSVTWPVNAIFGVVLPIVLGLGWACILSTSPAISASIYLRSIVYLVVSL LAALSLIDFRSIGLAVAHLVLASFIGFVLVLLD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12121; Mature: 12121
Theoretical pI: Translated: 8.77; Mature: 8.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSMNKKLAVFLLARDLSFVLSATILEVWCLSSVTWPVNAIFGVVLPIVLGLGWACILST CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC SPAISASIYLRSIVYLVVSLLAALSLIDFRSIGLAVAHLVLASFIGFVLVLLD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKSMNKKLAVFLLARDLSFVLSATILEVWCLSSVTWPVNAIFGVVLPIVLGLGWACILST CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC SPAISASIYLRSIVYLVVSLLAALSLIDFRSIGLAVAHLVLASFIGFVLVLLD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA