| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572218
Identifier: 28572218
GI number: 28572218
Start: 40845
End: 40934
Strand: Direct
Name: 28572218
Synonym: TW045
Alternate gene names: NA
Gene position: 40845-40934 (Clockwise)
Preceding gene: 28572217
Following gene: 28572219
Centisome position: 4.41
GC content: 44.44
Gene sequence:
>90_bases ATGGCGTTATTCGTGGTGATAACACTTCTTATTGGTGCCGGATTGTTTCTTCTGCGTGATTTGCTGCTTCCTGGTGATGA GCAAATCTAG
Upstream 100 bases:
>100_bases AACGCTGTAAAAACCTTTGACCCTGAAGGATGTCTATACGGCGCATCCAGTGGTGCAGTTGGCGGTTTTGACCTGGTTTA ATGACACCCTCTTGCAGGGT
Downstream 100 bases:
>100_bases CTATATACAATTTGTGCCACTTGCACCTCAATCGCTATACCCTTTTTAGGGCGATGTGCTCTTTCCGATGCGCTCTTTCT ACAGTGAGGTCGTTGCGCGC
Product: small membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 29; Mature: 28
Protein sequence:
>29_residues MALFVVITLLIGAGLFLLRDLLLPGDEQI
Sequences:
>Translated_29_residues MALFVVITLLIGAGLFLLRDLLLPGDEQI >Mature_28_residues ALFVVITLLIGAGLFLLRDLLLPGDEQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 3155; Mature: 3024
Theoretical pI: Translated: 3.88; Mature: 3.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALFVVITLLIGAGLFLLRDLLLPGDEQI CHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ALFVVITLLIGAGLFLLRDLLLPGDEQI HHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA