Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572219

Identifier: 28572219

GI number: 28572219

Start: 41326

End: 41835

Strand: Direct

Name: 28572219

Synonym: TW046

Alternate gene names: NA

Gene position: 41326-41835 (Clockwise)

Preceding gene: 28572218

Following gene: 28572220

Centisome position: 4.46

GC content: 47.25

Gene sequence:

>510_bases
ATGCAGAAGACTCACCCATACAATATGTATATGTTTGGCGAAATATTCAAGCAGCGCGCACTGGAGGTAAAGCGATCCAT
TGGGCAGATGCCGAGATTGCCCAGGGCATGCTTTATTGCAACACCGCCCCTTGTTCTAGTCAAGATGGTGATTCTTGTTA
CGCTGTGGTCATTCTGGTGGATGTGGCCTATTCTATTTTCGATAATTGCCATTGACTGGGCAGTTTCCGCGGTCGGCGTA
TTTTCTGCCAGGCGCTGGGCGAAACACAATCCAGATAAATTGCTCAACCTCAAGTGGGCTGTCTATCCGTTTGTTTTTAT
AATTGCGCTGTTCGCTTTTATTCGCCCCTTTTTACTGATGGGAGGCTATATCCTGCTGATGTTTTTTGCGCTTCCGATTG
GCGGCATGATCAGAATGTTTGCTCTGCTAGCAATTATGTCGGGGGCTAAGCCTAAGCCTATCTCAATGCTGCGACGTGCC
ATAAAGGGAAGAAAGAAGCGTGATCTCTAA

Upstream 100 bases:

>100_bases
GTTTTTTCTGCGAACCATGTAAAAGGAGCATCTCGCGATCAACGAAATACGTATATGTGTCATATGTCATTCCATATATT
TAATATGTGCAAGTAAGTAC

Downstream 100 bases:

>100_bases
AGCTTGATATAAGGGACCAGGGTTTATCTGATTTACGGTAGGCGCTTCGGAAGAACTTCACAGAAGTATGCCCTTGGCAA
GGCTATCTGCACAGAGGCGA

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MQKTHPYNMYMFGEIFKQRALEVKRSIGQMPRLPRACFIATPPLVLVKMVILVTLWSFWWMWPILFSIIAIDWAVSAVGV
FSARRWAKHNPDKLLNLKWAVYPFVFIIALFAFIRPFLLMGGYILLMFFALPIGGMIRMFALLAIMSGAKPKPISMLRRA
IKGRKKRDL

Sequences:

>Translated_169_residues
MQKTHPYNMYMFGEIFKQRALEVKRSIGQMPRLPRACFIATPPLVLVKMVILVTLWSFWWMWPILFSIIAIDWAVSAVGV
FSARRWAKHNPDKLLNLKWAVYPFVFIIALFAFIRPFLLMGGYILLMFFALPIGGMIRMFALLAIMSGAKPKPISMLRRA
IKGRKKRDL
>Mature_169_residues
MQKTHPYNMYMFGEIFKQRALEVKRSIGQMPRLPRACFIATPPLVLVKMVILVTLWSFWWMWPILFSIIAIDWAVSAVGV
FSARRWAKHNPDKLLNLKWAVYPFVFIIALFAFIRPFLLMGGYILLMFFALPIGGMIRMFALLAIMSGAKPKPISMLRRA
IKGRKKRDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19637; Mature: 19637

Theoretical pI: Translated: 11.83; Mature: 11.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
7.1 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKTHPYNMYMFGEIFKQRALEVKRSIGQMPRLPRACFIATPPLVLVKMVILVTLWSFWW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
MWPILFSIIAIDWAVSAVGVFSARRWAKHNPDKLLNLKWAVYPFVFIIALFAFIRPFLLM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGYILLMFFALPIGGMIRMFALLAIMSGAKPKPISMLRRAIKGRKKRDL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHCCCC
>Mature Secondary Structure
MQKTHPYNMYMFGEIFKQRALEVKRSIGQMPRLPRACFIATPPLVLVKMVILVTLWSFWW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
MWPILFSIIAIDWAVSAVGVFSARRWAKHNPDKLLNLKWAVYPFVFIIALFAFIRPFLLM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGYILLMFFALPIGGMIRMFALLAIMSGAKPKPISMLRRAIKGRKKRDL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA