| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is rfbG [H]
Identifier: 28572213
GI number: 28572213
Start: 36116
End: 37087
Strand: Direct
Name: rfbG [H]
Synonym: TW040
Alternate gene names: 28572213
Gene position: 36116-37087 (Clockwise)
Preceding gene: 28572209
Following gene: 28572216
Centisome position: 3.9
GC content: 45.99
Gene sequence:
>972_bases ATGGGCGTTTCCGTTGTTATGGCCACGTATAACGGCGGCCCGTTTCTCGCCGAGCAGCTGATGAGTATACTTTCTCAAAC TGTTCTGCCTGATGAGATAGTTATTGCTGATGACGGGTCCACTGATGATACCGAGAGAATTATTTTTCGCTTCAGGGGCA AATTCCCCAACCTGCTCTACATCCCAAGTGAGGGCACACGCCTCGGTCCAGGAAAAAATTTTGAAAGAGCCATTAAAAGA TCATCGCAGGAGTTTATTGTTTTCTCTGATCAGGATGACATATGGCAGCCTGATCGCATTGAGATACAACAGTCTGCTCT AAAGAGCAACCCTGGAGCTGTCCTGCTTCATAGCAATGCCAGACTTGTGGACCAAGATGGCAACATGCTTGGGGATTTGT TTTCTGCTTTAGGGATAACAAAAACAATCTTGACGAGGATCAATAACGGGGAGGCGTTTAACATATTGCTCAGACGCAAT GTTGTAACCGGCGCGACAGTCATGACACGTCGGGAGTTTGCCCTCTCAACATTGCCCTTTCCGGATGCATGGCTGCATGA TGAATGGCTCGCTATATGTGGAGGTAACCGGGTAAGGGTATTGGACCACTGCCTCATTCAATACAGACAACACGATAAAA ATCATATTGGCGCGCGGCGGCTCAGCGTAAGGGAAAAATTCCTAAAACTGTTCGAAGATACTGATGTAAGAAATGCGCGA CTCCTTGCAAGAACAGAGGCATTGACAAATTTTGCAGAGGAAAAATCAGGGAACATATTTTTCAATACGCGCGAGATCGG TTTGATAAGAAAAAAACTTACGCACGAGAGATTTCGCAGCACTCTCGGTAAAAGTCGACTTTTGCGAATTTGGCCAGTTT TGAAAAGGGTCAGTAGATATCGACAGTTCAGTAATTTTTCAGCCGATATCTTGCGCGACCTGCTCTCAAGTCGGCAGCAT GATAAACCTTAG
Upstream 100 bases:
>100_bases CTGGCTCTTATCAAGTTTTCCGGCATAGGTCTCCACAAGGAACTAATATTACAAAGACAGACGGTCTATCATTACAATGA TAGATTTATAAGTTGGTAAC
Downstream 100 bases:
>100_bases CGAATCACACCTATCGCGAGAATCTGGAAGTTTTGCAGCTTCCGGCGCAACAGTTCCAGAAAATACAGGTCATTCAAGGA ATTCTGTTTAAAGGTACCGG
Product: glycosyl transferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MGVSVVMATYNGGPFLAEQLMSILSQTVLPDEIVIADDGSTDDTERIIFRFRGKFPNLLYIPSEGTRLGPGKNFERAIKR SSQEFIVFSDQDDIWQPDRIEIQQSALKSNPGAVLLHSNARLVDQDGNMLGDLFSALGITKTILTRINNGEAFNILLRRN VVTGATVMTRREFALSTLPFPDAWLHDEWLAICGGNRVRVLDHCLIQYRQHDKNHIGARRLSVREKFLKLFEDTDVRNAR LLARTEALTNFAEEKSGNIFFNTREIGLIRKKLTHERFRSTLGKSRLLRIWPVLKRVSRYRQFSNFSADILRDLLSSRQH DKP
Sequences:
>Translated_323_residues MGVSVVMATYNGGPFLAEQLMSILSQTVLPDEIVIADDGSTDDTERIIFRFRGKFPNLLYIPSEGTRLGPGKNFERAIKR SSQEFIVFSDQDDIWQPDRIEIQQSALKSNPGAVLLHSNARLVDQDGNMLGDLFSALGITKTILTRINNGEAFNILLRRN VVTGATVMTRREFALSTLPFPDAWLHDEWLAICGGNRVRVLDHCLIQYRQHDKNHIGARRLSVREKFLKLFEDTDVRNAR LLARTEALTNFAEEKSGNIFFNTREIGLIRKKLTHERFRSTLGKSRLLRIWPVLKRVSRYRQFSNFSADILRDLLSSRQH DKP >Mature_322_residues GVSVVMATYNGGPFLAEQLMSILSQTVLPDEIVIADDGSTDDTERIIFRFRGKFPNLLYIPSEGTRLGPGKNFERAIKRS SQEFIVFSDQDDIWQPDRIEIQQSALKSNPGAVLLHSNARLVDQDGNMLGDLFSALGITKTILTRINNGEAFNILLRRNV VTGATVMTRREFALSTLPFPDAWLHDEWLAICGGNRVRVLDHCLIQYRQHDKNHIGARRLSVREKFLKLFEDTDVRNARL LARTEALTNFAEEKSGNIFFNTREIGLIRKKLTHERFRSTLGKSRLLRIWPVLKRVSRYRQFSNFSADILRDLLSSRQHD KP
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 36956; Mature: 36825
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVSVVMATYNGGPFLAEQLMSILSQTVLPDEIVIADDGSTDDTERIIFRFRGKFPNLLY CCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEE IPSEGTRLGPGKNFERAIKRSSQEFIVFSDQDDIWQPDRIEIQQSALKSNPGAVLLHSNA ECCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCC RLVDQDGNMLGDLFSALGITKTILTRINNGEAFNILLRRNVVTGATVMTRREFALSTLPF EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC PDAWLHDEWLAICGGNRVRVLDHCLIQYRQHDKNHIGARRLSVREKFLKLFEDTDVRNAR CCCHHCCCHHEEECCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH LLARTEALTNFAEEKSGNIFFNTREIGLIRKKLTHERFRSTLGKSRLLRIWPVLKRVSRY HHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RQFSNFSADILRDLLSSRQHDKP HHHCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure GVSVVMATYNGGPFLAEQLMSILSQTVLPDEIVIADDGSTDDTERIIFRFRGKFPNLLY CCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEE IPSEGTRLGPGKNFERAIKRSSQEFIVFSDQDDIWQPDRIEIQQSALKSNPGAVLLHSNA ECCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCC RLVDQDGNMLGDLFSALGITKTILTRINNGEAFNILLRRNVVTGATVMTRREFALSTLPF EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC PDAWLHDEWLAICGGNRVRVLDHCLIQYRQHDKNHIGARRLSVREKFLKLFEDTDVRNAR CCCHHCCCHHEEECCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH LLARTEALTNFAEEKSGNIFFNTREIGLIRKKLTHERFRSTLGKSRLLRIWPVLKRVSRY HHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RQFSNFSADILRDLLSSRQHDKP HHHCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7507920; 12384590; 12704152 [H]