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The map label for this gene is rfbA [H]

Identifier: 28572212

GI number: 28572212

Start: 35160

End: 36041

Strand: Reverse

Name: rfbA [H]

Synonym: TW039

Alternate gene names: 28572212

Gene position: 36041-35160 (Counterclockwise)

Preceding gene: 28572214

Following gene: 28572211

Centisome position: 3.89

GC content: 43.76

Gene sequence:

>882_bases
ATGCCGGAAAACTTGATAAGAGCCAGGTTATTATCAAAACCTTTGAAACCAGTTGGCGAGACGGGCATGTCTTCCTTAAA
GGGGATGTGGCAAAGGCGTGCACTTCTGTCTTTACTCATCCAGCGCGAAATCAAGATTCGCTATAAAGGAACTGCATTTG
GCGTTTTGTGGAGTATGGCAAGGCCGATTGTTCAGCTTCTGGTCTATTATTTCGCAATTGGCAAAATACTCGGTGCCGAA
AGGGGAATCGATCAGTTTGCAATATTTATTTTCGTTGGATTTGCCACCTGGTCTCTGTTCGCAGAGATAGCATCTACTGC
TGTTGTTTGCATGACTAATAATGGGGGTTTAATCAAAAAGATTTATTTACCAAGAGAGCTATTTGTTGTAACTGCGCTTG
GTAATGCACTGTTTACTTTTTCCATTTACATACTTATACTCATGGTGGCTGCTCCCGTGCTCGGCCAAATGCCGATAGAT
CCAACAAAATGGCAGGGGTTTGTGGGGATAGGCATTGCTATTGTTTACGCAACCGCTCTTGGGCTTGTTTTGGCACCTCT
GAATGTTTATATGAGAGATGCACAACATTTTCTGGATGTTGCACTCTCGATACTGTTCTGGCTAACACCGATTGTGTATT
CATTCCAACGAGTTAATGGGGCGGTACACTCAAATATTGCGGAGCAATTGTATCTTCTAAACCCAATGGCAATAGCAGTT
ATGGGCATGCAAAAAACATTTTGGACTGCTGGAAGCAGCGTGCATTGGCCTGCGGACATTGACGCACGTCTTATTATTGT
TTTTCTTGTCGGGCTCTTGTTACTGTTTTTAGCCCACAGGATTTTTGTTAAGATGCAGGCGAACTTGGCGCAAGAGCTGT
GA

Upstream 100 bases:

>100_bases
GTGGCCATAACAACGGAAACGCCCATGTTACCAACTTATAAATCTATCATTGTAATGATAGACCGTCTGTCTTTGTAATA
TTAGTTCCTTGTGGAGACCT

Downstream 100 bases:

>100_bases
ATGTCAGGCAAGAGATAAGTCCCAAGCGGTTTTATTGCAGATAAACTCACAATGAAAAATAAGATGTCAGTGGTAAATAG
TAATGCGGTAAAACTGGCGA

Product: ABC transport integral membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MPENLIRARLLSKPLKPVGETGMSSLKGMWQRRALLSLLIQREIKIRYKGTAFGVLWSMARPIVQLLVYYFAIGKILGAE
RGIDQFAIFIFVGFATWSLFAEIASTAVVCMTNNGGLIKKIYLPRELFVVTALGNALFTFSIYILILMVAAPVLGQMPID
PTKWQGFVGIGIAIVYATALGLVLAPLNVYMRDAQHFLDVALSILFWLTPIVYSFQRVNGAVHSNIAEQLYLLNPMAIAV
MGMQKTFWTAGSSVHWPADIDARLIIVFLVGLLLLFLAHRIFVKMQANLAQEL

Sequences:

>Translated_293_residues
MPENLIRARLLSKPLKPVGETGMSSLKGMWQRRALLSLLIQREIKIRYKGTAFGVLWSMARPIVQLLVYYFAIGKILGAE
RGIDQFAIFIFVGFATWSLFAEIASTAVVCMTNNGGLIKKIYLPRELFVVTALGNALFTFSIYILILMVAAPVLGQMPID
PTKWQGFVGIGIAIVYATALGLVLAPLNVYMRDAQHFLDVALSILFWLTPIVYSFQRVNGAVHSNIAEQLYLLNPMAIAV
MGMQKTFWTAGSSVHWPADIDARLIIVFLVGLLLLFLAHRIFVKMQANLAQEL
>Mature_292_residues
PENLIRARLLSKPLKPVGETGMSSLKGMWQRRALLSLLIQREIKIRYKGTAFGVLWSMARPIVQLLVYYFAIGKILGAER
GIDQFAIFIFVGFATWSLFAEIASTAVVCMTNNGGLIKKIYLPRELFVVTALGNALFTFSIYILILMVAAPVLGQMPIDP
TKWQGFVGIGIAIVYATALGLVLAPLNVYMRDAQHFLDVALSILFWLTPIVYSFQRVNGAVHSNIAEQLYLLNPMAIAVM
GMQKTFWTAGSSVHWPADIDARLIIVFLVGLLLLFLAHRIFVKMQANLAQEL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 32607; Mature: 32475

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00014 ER_TARGET ; PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPENLIRARLLSKPLKPVGETGMSSLKGMWQRRALLSLLIQREIKIRYKGTAFGVLWSMA
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHH
RPIVQLLVYYFAIGKILGAERGIDQFAIFIFVGFATWSLFAEIASTAVVCMTNNGGLIKK
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEE
IYLPRELFVVTALGNALFTFSIYILILMVAAPVLGQMPIDPTKWQGFVGIGIAIVYATAL
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
GLVLAPLNVYMRDAQHFLDVALSILFWLTPIVYSFQRVNGAVHSNIAEQLYLLNPMAIAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
MGMQKTFWTAGSSVHWPADIDARLIIVFLVGLLLLFLAHRIFVKMQANLAQEL
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PENLIRARLLSKPLKPVGETGMSSLKGMWQRRALLSLLIQREIKIRYKGTAFGVLWSMA
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHH
RPIVQLLVYYFAIGKILGAERGIDQFAIFIFVGFATWSLFAEIASTAVVCMTNNGGLIKK
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEE
IYLPRELFVVTALGNALFTFSIYILILMVAAPVLGQMPIDPTKWQGFVGIGIAIVYATAL
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
GLVLAPLNVYMRDAQHFLDVALSILFWLTPIVYSFQRVNGAVHSNIAEQLYLLNPMAIAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
MGMQKTFWTAGSSVHWPADIDARLIIVFLVGLLLLFLAHRIFVKMQANLAQEL
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]