| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is bccA [H]
Identifier: 28572195
GI number: 28572195
Start: 20441
End: 22216
Strand: Reverse
Name: bccA [H]
Synonym: TW020
Alternate gene names: 28572195
Gene position: 22216-20441 (Counterclockwise)
Preceding gene: 28572196
Following gene: 28572193
Centisome position: 2.4
GC content: 46.11
Gene sequence:
>1776_bases ATGAAAAAAATAACCCGACTATTGATAGCGAACCGCGGCGAAATAGCGGTAAGGGTTATACGTGCCTGTCGCGATAAAGC AATTGCCTCCATTGCAATATATTCGGATCAAGACAGGGATGCGGTACATACTCAACTTGCGGATGAAGCTTACTGCCTGG AGGGTGAAACCGCTGCCGAAACCTACCTAAACATAGAGAAAATACTCGATATAGCAAAACTCAGTCGGGCAGATGGAATA CATCCGGGATACGGCTTTCTTGCCGAAAGCCCCGAATTTGCTGAAGCGGTATCAAGTGCGGGTATTACATGGGTCGGTCC ACGCGCAGGGGTCATAGCGCTCCTGGCAGACAAATTATCGGCACGAAAGATTGCAGAACAGGTTGGAGTGCCGGTCCCCC CGGGTGGCGAACATGTGGTCTCTTGTGCATCTGAAGTGCATAATTTTGCAGACAAGTATGGACTTCCAATTGCAATAAAG GCTGCGTATGGCGGTGGTGGTCTTGGCATGAAAGTTGTAAAACAAAAAAAGAATATAGATGAGCTTTTCGCATCAGCACA ACGTGAAGCGCAGGCGGCATTCGGAAACAAGGAATGTTTCATAGAAAAATATATTGATAGACCACGACATGTAGAAACAC AATGTCTGGCTGATCTGTTTGGCAATGTACAAGTCGTTTCCACGCGAGACTGTTCCGTGCAGCGCAGACACCAAAAACTA ATTGAAGAAGCGCCCGCCTACACGCTGACAGATAAACAAGAAGAAACCCTTATCACCGCGAGCAAGGCTGTTATGAAAGC AGCTGAATATTCAGGTGCAGGCACCTGCGAATTTCTCATTGACCAAGATGGGAAAATATTTTTTCTGGAAGTTAATGCAA GGCTTCAAGTTGAACACCCAGTAACAGAAGAGATAACCGGAATTGATCTCGTTCTGGAGCAGATAAATATAGCTGAGGGA AAGCTGCTCAAAAACCTTGAAACACCCGTATACAAAGGACATAGTCTGGAGTTTAGGATAAATGCTGAGGATGCAAACAG TGGTTTTATGCCGAGACATGGGAAGGTTGTAAAATTCGAACCCCCTGGCGGTCTAGGAATTCGTATTGATAGTGGAATAA AGGCGGGCGATACAATAGGGGCAGCCTTTGATTCTCTGCTGTGCAAACTCATTGTTACGGGAAACAATAGGGAATGCGCT TTGGCACGTGCCAGGCGGGCTCTTGATGAGTTTGTAATTGACGGTGTGACAACGCTTATTCCGTTCCACAGGAATATTCT CAATCAACCCGACTTCATAAATGGAGGGATGTATACGGGTTGGGTGGAAAACGAATATAGCAAGCTAGTTAACAAGCAAA CTGATGCAAGTACGGTGCCGGATATACAAGACACTCTGTCTGTATCAAAAAATTTAAGAGAAATAATTGTTGAGGTAAAC AGAAAACAAATTAGAGTGCGCCTGCCATCCCCCATAGGGGAATATCCCACAGAAAGGCAAAAACCTCCCGGCAGGCGGGT AGGGCACAATTTCAGACAGAAAACACAGGAGAAGAACCCCGATTCTATTTTTTCGCCAATGCAAGCGGTTGTTGTGAAAG TAAATGTTACGGAAGGCCAGTCCGTCAAAAAAGACGACCTGTTAATCGTGCTTGAGGCCATGAAAATGGAACAGCCGATA GTGGCCCCACGAGATGGGGTAGTTGAAAAAATCAACGCGCACACAGGCGAGACAGTGCCAAGCGGTCACGAATTGTTACG CTTGAAGAAGGTTTGA
Upstream 100 bases:
>100_bases GTCGGGATACACCCCACCGGGTCTGTGCCTGGAATAGGCGGGATGCCAAGCAGCGCGGTAACACGCATTAGGTACACAAT CAAGGCTGGCTACTAGATAT
Downstream 100 bases:
>100_bases AAAAAAATACACACCCCATTGCAAGGCGCTGCCAGAGCGCTGCCCAGAATGTCAGATTTCGGAAGAGATCAGGGCGACGC GCTGTCGGTTCTCACGTGCG
Product: acyl-CoA carboxylase complex A subunit
Products: NA
Alternate protein names: Biotin carboxylase; Biotin carboxyl carrier protein; BCCP [H]
Number of amino acids: Translated: 591; Mature: 591
Protein sequence:
>591_residues MKKITRLLIANRGEIAVRVIRACRDKAIASIAIYSDQDRDAVHTQLADEAYCLEGETAAETYLNIEKILDIAKLSRADGI HPGYGFLAESPEFAEAVSSAGITWVGPRAGVIALLADKLSARKIAEQVGVPVPPGGEHVVSCASEVHNFADKYGLPIAIK AAYGGGGLGMKVVKQKKNIDELFASAQREAQAAFGNKECFIEKYIDRPRHVETQCLADLFGNVQVVSTRDCSVQRRHQKL IEEAPAYTLTDKQEETLITASKAVMKAAEYSGAGTCEFLIDQDGKIFFLEVNARLQVEHPVTEEITGIDLVLEQINIAEG KLLKNLETPVYKGHSLEFRINAEDANSGFMPRHGKVVKFEPPGGLGIRIDSGIKAGDTIGAAFDSLLCKLIVTGNNRECA LARARRALDEFVIDGVTTLIPFHRNILNQPDFINGGMYTGWVENEYSKLVNKQTDASTVPDIQDTLSVSKNLREIIVEVN RKQIRVRLPSPIGEYPTERQKPPGRRVGHNFRQKTQEKNPDSIFSPMQAVVVKVNVTEGQSVKKDDLLIVLEAMKMEQPI VAPRDGVVEKINAHTGETVPSGHELLRLKKV
Sequences:
>Translated_591_residues MKKITRLLIANRGEIAVRVIRACRDKAIASIAIYSDQDRDAVHTQLADEAYCLEGETAAETYLNIEKILDIAKLSRADGI HPGYGFLAESPEFAEAVSSAGITWVGPRAGVIALLADKLSARKIAEQVGVPVPPGGEHVVSCASEVHNFADKYGLPIAIK AAYGGGGLGMKVVKQKKNIDELFASAQREAQAAFGNKECFIEKYIDRPRHVETQCLADLFGNVQVVSTRDCSVQRRHQKL IEEAPAYTLTDKQEETLITASKAVMKAAEYSGAGTCEFLIDQDGKIFFLEVNARLQVEHPVTEEITGIDLVLEQINIAEG KLLKNLETPVYKGHSLEFRINAEDANSGFMPRHGKVVKFEPPGGLGIRIDSGIKAGDTIGAAFDSLLCKLIVTGNNRECA LARARRALDEFVIDGVTTLIPFHRNILNQPDFINGGMYTGWVENEYSKLVNKQTDASTVPDIQDTLSVSKNLREIIVEVN RKQIRVRLPSPIGEYPTERQKPPGRRVGHNFRQKTQEKNPDSIFSPMQAVVVKVNVTEGQSVKKDDLLIVLEAMKMEQPI VAPRDGVVEKINAHTGETVPSGHELLRLKKV >Mature_591_residues MKKITRLLIANRGEIAVRVIRACRDKAIASIAIYSDQDRDAVHTQLADEAYCLEGETAAETYLNIEKILDIAKLSRADGI HPGYGFLAESPEFAEAVSSAGITWVGPRAGVIALLADKLSARKIAEQVGVPVPPGGEHVVSCASEVHNFADKYGLPIAIK AAYGGGGLGMKVVKQKKNIDELFASAQREAQAAFGNKECFIEKYIDRPRHVETQCLADLFGNVQVVSTRDCSVQRRHQKL IEEAPAYTLTDKQEETLITASKAVMKAAEYSGAGTCEFLIDQDGKIFFLEVNARLQVEHPVTEEITGIDLVLEQINIAEG KLLKNLETPVYKGHSLEFRINAEDANSGFMPRHGKVVKFEPPGGLGIRIDSGIKAGDTIGAAFDSLLCKLIVTGNNRECA LARARRALDEFVIDGVTTLIPFHRNILNQPDFINGGMYTGWVENEYSKLVNKQTDASTVPDIQDTLSVSKNLREIIVEVN RKQIRVRLPSPIGEYPTERQKPPGRRVGHNFRQKTQEKNPDSIFSPMQAVVVKVNVTEGQSVKKDDLLIVLEAMKMEQPI VAPRDGVVEKINAHTGETVPSGHELLRLKKV
Specific function: This protein carries two functions:biotin carboxyl carrier protein and biotin carboxyltransferase [H]
COG id: COG4770
COG function: function code I; Acetyl/propionyl-CoA carboxylase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 biotinyl-binding domain [H]
Homologues:
Organism=Homo sapiens, GI106049528, Length=448, Percent_Identity=44.4196428571429, Blast_Score=372, Evalue=1e-103, Organism=Homo sapiens, GI106049295, Length=448, Percent_Identity=44.4196428571429, Blast_Score=372, Evalue=1e-103, Organism=Homo sapiens, GI106049292, Length=448, Percent_Identity=44.4196428571429, Blast_Score=372, Evalue=1e-103, Organism=Homo sapiens, GI116805327, Length=451, Percent_Identity=40.7982261640798, Blast_Score=354, Evalue=2e-97, Organism=Homo sapiens, GI295821183, Length=628, Percent_Identity=34.2356687898089, Blast_Score=347, Evalue=2e-95, Organism=Homo sapiens, GI189095269, Length=449, Percent_Identity=40.0890868596882, Blast_Score=340, Evalue=2e-93, Organism=Homo sapiens, GI65506442, Length=448, Percent_Identity=40.1785714285714, Blast_Score=340, Evalue=2e-93, Organism=Homo sapiens, GI38679971, Length=503, Percent_Identity=29.6222664015905, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI38679977, Length=503, Percent_Identity=29.6222664015905, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI38679967, Length=503, Percent_Identity=29.6222664015905, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI38679960, Length=503, Percent_Identity=29.6222664015905, Blast_Score=213, Evalue=3e-55, Organism=Homo sapiens, GI38679974, Length=503, Percent_Identity=29.6222664015905, Blast_Score=213, Evalue=3e-55, Organism=Homo sapiens, GI134142062, Length=502, Percent_Identity=29.4820717131474, Blast_Score=209, Evalue=7e-54, Organism=Escherichia coli, GI1789654, Length=444, Percent_Identity=43.018018018018, Blast_Score=350, Evalue=1e-97, Organism=Caenorhabditis elegans, GI17562816, Length=448, Percent_Identity=44.8660714285714, Blast_Score=373, Evalue=1e-103, Organism=Caenorhabditis elegans, GI71987519, Length=452, Percent_Identity=41.3716814159292, Blast_Score=336, Evalue=2e-92, Organism=Caenorhabditis elegans, GI17567343, Length=447, Percent_Identity=39.8210290827741, Blast_Score=327, Evalue=1e-89, Organism=Caenorhabditis elegans, GI133931226, Length=492, Percent_Identity=28.8617886178862, Blast_Score=180, Evalue=2e-45, Organism=Caenorhabditis elegans, GI71997168, Length=511, Percent_Identity=27.0058708414873, Blast_Score=179, Evalue=5e-45, Organism=Caenorhabditis elegans, GI71997163, Length=511, Percent_Identity=27.2015655577299, Blast_Score=178, Evalue=7e-45, Organism=Saccharomyces cerevisiae, GI6319695, Length=461, Percent_Identity=43.6008676789588, Blast_Score=365, Evalue=1e-101, Organism=Saccharomyces cerevisiae, GI6321376, Length=462, Percent_Identity=43.0735930735931, Blast_Score=348, Evalue=1e-96, Organism=Saccharomyces cerevisiae, GI6319685, Length=442, Percent_Identity=39.8190045248869, Blast_Score=315, Evalue=1e-86, Organism=Saccharomyces cerevisiae, GI6324343, Length=513, Percent_Identity=30.0194931773879, Blast_Score=209, Evalue=9e-55, Organism=Saccharomyces cerevisiae, GI6323863, Length=485, Percent_Identity=30.9278350515464, Blast_Score=208, Evalue=2e-54, Organism=Saccharomyces cerevisiae, GI6322331, Length=299, Percent_Identity=23.0769230769231, Blast_Score=70, Evalue=7e-13, Organism=Drosophila melanogaster, GI24652212, Length=527, Percent_Identity=42.1252371916509, Blast_Score=370, Evalue=1e-102, Organism=Drosophila melanogaster, GI24652210, Length=527, Percent_Identity=42.1252371916509, Blast_Score=370, Evalue=1e-102, Organism=Drosophila melanogaster, GI24652214, Length=527, Percent_Identity=42.1252371916509, Blast_Score=370, Evalue=1e-102, Organism=Drosophila melanogaster, GI19921944, Length=527, Percent_Identity=42.1252371916509, Blast_Score=370, Evalue=1e-102, Organism=Drosophila melanogaster, GI24652216, Length=527, Percent_Identity=42.1252371916509, Blast_Score=370, Evalue=1e-102, Organism=Drosophila melanogaster, GI281363050, Length=448, Percent_Identity=45.5357142857143, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24652224, Length=448, Percent_Identity=45.5357142857143, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24652222, Length=448, Percent_Identity=45.5357142857143, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24652220, Length=448, Percent_Identity=45.5357142857143, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24652218, Length=448, Percent_Identity=45.5357142857143, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24651757, Length=452, Percent_Identity=40.7079646017699, Blast_Score=345, Evalue=5e-95, Organism=Drosophila melanogaster, GI24651759, Length=411, Percent_Identity=40.3892944038929, Blast_Score=305, Evalue=4e-83, Organism=Drosophila melanogaster, GI161076407, Length=496, Percent_Identity=29.4354838709677, Blast_Score=202, Evalue=6e-52, Organism=Drosophila melanogaster, GI24586460, Length=496, Percent_Identity=29.4354838709677, Blast_Score=202, Evalue=6e-52, Organism=Drosophila melanogaster, GI161076409, Length=496, Percent_Identity=29.6370967741936, Blast_Score=202, Evalue=7e-52, Organism=Drosophila melanogaster, GI24586458, Length=496, Percent_Identity=29.6370967741936, Blast_Score=202, Evalue=7e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR001882 - InterPro: IPR011764 - InterPro: IPR005482 - InterPro: IPR000089 - InterPro: IPR005479 - InterPro: IPR005481 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 - InterPro: IPR011053 [H]
Pfam domain/function: PF02785 Biotin_carb_C; PF00364 Biotin_lipoyl; PF00289 CPSase_L_chain; PF02786 CPSase_L_D2 [H]
EC number: =6.3.4.14 [H]
Molecular weight: Translated: 64933; Mature: 64933
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: PS50975 ATP_GRASP ; PS00867 CPSASE_2 ; PS50979 BC ; PS50968 BIOTINYL_LIPOYL ; PS00188 BIOTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKITRLLIANRGEIAVRVIRACRDKAIASIAIYSDQDRDAVHTQLADEAYCLEGETAAE CCHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHCCCCEEECCCHHHH TYLNIEKILDIAKLSRADGIHPGYGFLAESPEFAEAVSSAGITWVGPRAGVIALLADKLS HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHHHHH ARKIAEQVGVPVPPGGEHVVSCASEVHNFADKYGLPIAIKAAYGGGGLGMKVVKQKKNID HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCHH ELFASAQREAQAAFGNKECFIEKYIDRPRHVETQCLADLFGNVQVVSTRDCSVQRRHQKL HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHH IEEAPAYTLTDKQEETLITASKAVMKAAEYSGAGTCEFLIDQDGKIFFLEVNARLQVEHP HHHCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCEEEECCC VTEEITGIDLVLEQINIAEGKLLKNLETPVYKGHSLEFRINAEDANSGFMPRHGKVVKFE CHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEC PPGGLGIRIDSGIKAGDTIGAAFDSLLCKLIVTGNNRECALARARRALDEFVIDGVTTLI CCCCEEEEECCCCCCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH PFHRNILNQPDFINGGMYTGWVENEYSKLVNKQTDASTVPDIQDTLSVSKNLREIIVEVN HHHHHHCCCCCCCCCCEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC RKQIRVRLPSPIGEYPTERQKPPGRRVGHNFRQKTQEKNPDSIFSPMQAVVVKVNVTEGQ CCEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHHCCCCCHHHHCCCEEEEEEEECCCCC SVKKDDLLIVLEAMKMEQPIVAPRDGVVEKINAHTGETVPSGHELLRLKKV CCCCCCEEEEEEHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHEEECC >Mature Secondary Structure MKKITRLLIANRGEIAVRVIRACRDKAIASIAIYSDQDRDAVHTQLADEAYCLEGETAAE CCHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHCCCCEEECCCHHHH TYLNIEKILDIAKLSRADGIHPGYGFLAESPEFAEAVSSAGITWVGPRAGVIALLADKLS HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHHHHH ARKIAEQVGVPVPPGGEHVVSCASEVHNFADKYGLPIAIKAAYGGGGLGMKVVKQKKNID HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCHH ELFASAQREAQAAFGNKECFIEKYIDRPRHVETQCLADLFGNVQVVSTRDCSVQRRHQKL HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHH IEEAPAYTLTDKQEETLITASKAVMKAAEYSGAGTCEFLIDQDGKIFFLEVNARLQVEHP HHHCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCEEEECCC VTEEITGIDLVLEQINIAEGKLLKNLETPVYKGHSLEFRINAEDANSGFMPRHGKVVKFE CHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEC PPGGLGIRIDSGIKAGDTIGAAFDSLLCKLIVTGNNRECALARARRALDEFVIDGVTTLI CCCCEEEEECCCCCCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH PFHRNILNQPDFINGGMYTGWVENEYSKLVNKQTDASTVPDIQDTLSVSKNLREIIVEVN HHHHHHCCCCCCCCCCEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC RKQIRVRLPSPIGEYPTERQKPPGRRVGHNFRQKTQEKNPDSIFSPMQAVVVKVNVTEGQ CCEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHHCCCCCHHHHCCCEEEEEEEECCCCC SVKKDDLLIVLEAMKMEQPIVAPRDGVVEKINAHTGETVPSGHELLRLKKV CCCCCCEEEEEEHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7909542; 11234002 [H]