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The map label for this gene is ydcA [H]

Identifier: 28572184

GI number: 28572184

Start: 10472

End: 11095

Strand: Direct

Name: ydcA [H]

Synonym: TW009

Alternate gene names: 28572184

Gene position: 10472-11095 (Clockwise)

Preceding gene: 28572182

Following gene: 28572186

Centisome position: 1.13

GC content: 50.48

Gene sequence:

>624_bases
ATGATTATCTGGCGAAGGCTTCGTGCTTATCCTCCGGCCACTGCAACCATAATTACTCTGTGCATTTTTTTGTGGCTATT
GCAGATGCTTCTGGGTTCCGGTGTAACCACAAGTCTTGCCTTCGCGGGGGCGTATGTGTTTCCGGACAGCCTGCAGCCGT
GGAGGATTTTTACCAGCATGTTCTTGCATTCAACCTTTACACCGCTTCACCTCCTGTTCAACATGTACTCTCTGTGGTGG
TTGGGCAGTAACCTGGAGCAGCGAATAGGCTCATGGCGCTTTTTGGCGCTCTATTTCATAAGTGGCCTGGGTGCCGCTGT
GGGTATTGTGTATCTTCAGCCTTATAACACCCTGACACTGGGGGCATCGGGTGGTATATTCGGCCTTCTTGCGGCATTTA
TTGTGTTGCGCATTGACTCGGGACAGTTATGGGGGATTGTCGGCCTGAACTTGATCATTTCGTTTTTACTTCCCGGGGTA
TCCTGGCAAGCACATATCGGGGGTCTTTTATCAGGTTTTGTTGCAGCGTGGGCCATAAAGCGCAGGAATCCATTATTGCT
TGGGGCACAGGTCATTCTGCTCATTGGAGTAATTGCAACGAGACCGTACCTGCTGTACGCCTAA

Upstream 100 bases:

>100_bases
TACAAGCTAATTGTACGGTCCGGGTGGCTTTTGTATGGCTCGCTCCTTTTGTGCCCCCTTGCTTTTTCGTGGTTAATATC
GGAGGGTGTTCGCGAGGTTT

Downstream 100 bases:

>100_bases
CCCCGAAGCGGCCTATCGCCTGGGCGCAGGGGTCGTATTACTTCCAGCGTGACATCATTGCAAATCCGGCCATGATTATT
CCGAACGCTATGAGGATATT

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MIIWRRLRAYPPATATIITLCIFLWLLQMLLGSGVTTSLAFAGAYVFPDSLQPWRIFTSMFLHSTFTPLHLLFNMYSLWW
LGSNLEQRIGSWRFLALYFISGLGAAVGIVYLQPYNTLTLGASGGIFGLLAAFIVLRIDSGQLWGIVGLNLIISFLLPGV
SWQAHIGGLLSGFVAAWAIKRRNPLLLGAQVILLIGVIATRPYLLYA

Sequences:

>Translated_207_residues
MIIWRRLRAYPPATATIITLCIFLWLLQMLLGSGVTTSLAFAGAYVFPDSLQPWRIFTSMFLHSTFTPLHLLFNMYSLWW
LGSNLEQRIGSWRFLALYFISGLGAAVGIVYLQPYNTLTLGASGGIFGLLAAFIVLRIDSGQLWGIVGLNLIISFLLPGV
SWQAHIGGLLSGFVAAWAIKRRNPLLLGAQVILLIGVIATRPYLLYA
>Mature_207_residues
MIIWRRLRAYPPATATIITLCIFLWLLQMLLGSGVTTSLAFAGAYVFPDSLQPWRIFTSMFLHSTFTPLHLLFNMYSLWW
LGSNLEQRIGSWRFLALYFISGLGAAVGIVYLQPYNTLTLGASGGIFGLLAAFIVLRIDSGQLWGIVGLNLIISFLLPGV
SWQAHIGGLLSGFVAAWAIKRRNPLLLGAQVILLIGVIATRPYLLYA

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S54 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002610
- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 22891; Mature: 22891

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIWRRLRAYPPATATIITLCIFLWLLQMLLGSGVTTSLAFAGAYVFPDSLQPWRIFTSM
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCCCCCHHHHHHHH
FLHSTFTPLHLLFNMYSLWWLGSNLEQRIGSWRFLALYFISGLGAAVGIVYLQPYNTLTL
HHHHCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHEEEEECCCCEEEE
GASGGIFGLLAAFIVLRIDSGQLWGIVGLNLIISFLLPGVSWQAHIGGLLSGFVAAWAIK
CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RRNPLLLGAQVILLIGVIATRPYLLYA
CCCCCHHHHHHHHHHHHHHHCCEEEEC
>Mature Secondary Structure
MIIWRRLRAYPPATATIITLCIFLWLLQMLLGSGVTTSLAFAGAYVFPDSLQPWRIFTSM
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCCCCCHHHHHHHH
FLHSTFTPLHLLFNMYSLWWLGSNLEQRIGSWRFLALYFISGLGAAVGIVYLQPYNTLTL
HHHHCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHEEEEECCCCEEEE
GASGGIFGLLAAFIVLRIDSGQLWGIVGLNLIISFLLPGVSWQAHIGGLLSGFVAAWAIK
CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RRNPLLLGAQVILLIGVIATRPYLLYA
CCCCCHHHHHHHHHHHHHHHCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]