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The map label for this gene is luxO

Identifier: 326424129

GI number: 326424129

Start: 3157597

End: 3158958

Strand: Reverse

Name: luxO

Synonym: NA

Alternate gene names: 326424129

Gene position: 3158958-3157597 (Counterclockwise)

Preceding gene: 27366360

Following gene: 27366358

Centisome position: 96.25

GC content: 47.94

Gene sequence:

>1362_bases
ATGGTAGAAGACACCGCTTCTGTCGCAGCCCTCTATCGCTCCTATCTCATGCCATTGGGTATCGATATCAATATCGTGGG
TACTGGACGTGACGCGATAGACAGTCTAAAACATCGCATTCCAGATCTTATTCTGCTGGATTTACGTCTACCGGACATGA
CGGGAATGGACGTATTGCATGCAGTGAAAGCAAGTCACCCTGATGTTCCTATCATTTTCATGACCGCACACGGCTCGATC
GATACTGCCGTTGAAGCAATGCGACATGGGTCTCAGGATTTTCTTATCAAGCCATGCGAAGCGGATCGCTTGAGGGTCAC
GGTAAACAACGCTATCCGCAAAGCGAGTAAATTGAAGAATGATGCGGACAGTGCAGGCAGCCAAAATTATCAAGGCTTTA
TCGGCAGTAGCCAAAAAATGCAGCAGGTTTATCGCACCATTGACTCCGCGGCGAGCAGTAAAGCAAGCATCTTTATCACA
GGTGAAAGTGGTACAGGTAAAGAGGTGTGCGCAGAAGCCATTCATGCGGCCAGTCGACGTGGAGACAAGCCATTTATCGC
GATTAACTGTGCTGCAATTCCCAAGGATTTGATTGAAAGCGAGCTATTTGGTCATGTCAAAGGTGCGTTTACCGGCGCTG
CGACCGATCGCCAAGGGGCGGCAGAGCTCGCTGATGGGGGCACACTTTTCCTGGATGAGTTGTGTGAAATGGACCTGGAT
CTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTTCCAAAAAGTAGGCTCTTCGAAAATGAAGAGTGTTGACGT
GCGTTTTGTGTGCGCGACAAACCGAGACCCCTGGAAAGAGGTACAAGAAGGGCGCTTTCGCGAAGATTTGTACTACCGAC
TTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAGCGTGGAGAGGATGTCATCGAGATCGCTTACTCGTTACTGGGT
TACATGTCACACGAGGAAGGGAAAAACTTTGTTCGTTTCTCTCAACCTGTGATAGATAGATTTAACGAATATGAGTGGCC
AGGCAATGTGCGTCAGTTACAAAATGTGCTGCGTAATGTCGTGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGC
TGCCGCCTCCTTTGAACCAGCCCTTTGAACGCAAAGAAAGTGTGCAGCCTGATCTGAGTGAGTTGATTTCCGTCAGGGAT
ATTTGTCCATTGTGGTTGACAGAGAAACTGGCGATTGAACAAGCGATCAAAGCGTGTGATGGTAACATTCCGAGAGCCGC
TGGCTATCTGGATGTCAGCCCGTCAACAATTTATCGCAAGTTACAGGCGTGGAACGAAAAAGAAGAAAAACAGAAAGCAT
AA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: Nitrogen regulation protein NR(I)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:
NA

Sequences:

>Translated_453_residues
MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDADSAGSQNYQGFIGSSQKMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
YMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKESVQPDLSELISVRD
ICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA
>Mature_453_residues
MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDADSAGSQNYQGFIGSSQKMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
YMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKESVQPDLSELISVRD
ICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Specific function: Involved in the regulation of different processes depending on the cell density. Acts together with sigma-54 to repress, perhaps indirectly, some genes

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain

Homologues:

Organism=Escherichia coli, GI1790437, Length=442, Percent_Identity=38.9140271493213, Blast_Score=321, Evalue=7e-89,
Organism=Escherichia coli, GI1788550, Length=454, Percent_Identity=39.4273127753304, Blast_Score=314, Evalue=7e-87,
Organism=Escherichia coli, GI1790299, Length=393, Percent_Identity=42.7480916030534, Blast_Score=312, Evalue=3e-86,
Organism=Escherichia coli, GI1788905, Length=423, Percent_Identity=38.0614657210402, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI87082117, Length=365, Percent_Identity=38.3561643835616, Blast_Score=238, Evalue=7e-64,
Organism=Escherichia coli, GI1789233, Length=331, Percent_Identity=40.4833836858006, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI87082152, Length=259, Percent_Identity=46.7181467181467, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI1789087, Length=301, Percent_Identity=40.8637873754153, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1786524, Length=324, Percent_Identity=38.2716049382716, Blast_Score=204, Evalue=9e-54,
Organism=Escherichia coli, GI1787583, Length=264, Percent_Identity=39.7727272727273, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI87081872, Length=254, Percent_Identity=40.1574803149606, Blast_Score=181, Evalue=8e-47,
Organism=Escherichia coli, GI1789828, Length=284, Percent_Identity=32.7464788732394, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081858, Length=391, Percent_Identity=25.3196930946292, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LUXO_VIBVU (Q8CWJ5)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_761887.1
- ProteinModelPortal:   Q8CWJ5
- SMR:   Q8CWJ5
- GeneID:   1179921
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_3091
- HOGENOM:   HBG740884
- OMA:   SYLNPLG
- ProtClustDB:   CLSK874182
- BioCyc:   VVUL216895:VV1_3091-MONOMER
- GO:   GO:0005622
- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789
- SMART:   SM00382
- SMART:   SM00448

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat; SSF52172 CheY_like; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 50515; Mature: 50515

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS50110 RESPONSE_REGULATORY; PS00675 SIGMA54_INTERACT_1; PS00676 SIGMA54_INTERACT_2; PS00688 SIGMA54_INTERACT_3; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLH
CCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH
AVKASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKN
HHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEECCCCCCEEEEHHHHHHHHHHHCC
DADSAGSQNYQGFIGSSQKMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASRR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
CCCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCC
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLH
HHHHHHHHHHCCCHHHHCCCHHCEEEEEEEEECCCCHHHHHHCCCCHHCEEEEEEEEEEC
LPPLRERGEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNV
CCCHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHE
VVLNNGKEITMEMLPPPLNQPFERKESVQPDLSELISVRDICPLWLTEKLAIEQAIKACD
EEECCCCEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA
CCCCCCCCEEECCHHHHHHHHHHHCCHHHHHCC
>Mature Secondary Structure
MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLH
CCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH
AVKASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKN
HHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEECCCCCCEEEEHHHHHHHHHHHCC
DADSAGSQNYQGFIGSSQKMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASRR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
CCCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCC
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLH
HHHHHHHHHHCCCHHHHCCCHHCEEEEEEEEECCCCHHHHHHCCCCHHCEEEEEEEEEEC
LPPLRERGEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNV
CCCHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHE
VVLNNGKEITMEMLPPPLNQPFERKESVQPDLSELISVRDICPLWLTEKLAIEQAIKACD
EEECCCCEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA
CCCCCCCCEEECCHHHHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA