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The map label for this gene is ydjA [H]

Identifier: 27366397

GI number: 27366397

Start: 3202772

End: 3203320

Strand: Reverse

Name: ydjA [H]

Synonym: VV1_3131

Alternate gene names: 27366397

Gene position: 3203320-3202772 (Counterclockwise)

Preceding gene: 27366398

Following gene: 27366396

Centisome position: 97.61

GC content: 51.37

Gene sequence:

>549_bases
ATGGACGCTCTCGATCTTCTACTTAATCGTCGTTCTATTGGTAAATTGGCCGCTCCAGCCCCAGAAGGCAAAGCACTTGA
AAATATCATTCGTGCGGGATTAAGAGCCCCAGATCACGGCGCGCTGACGCCTTGGCGCTTTGTCATCGCGCAAGGCTCTG
GCCTGCAGAAGTTGTCAGACATCCTAGTGAAGGCGGCACAGGCCAAAGGCAGTGAAGAATCGGTGGTGGAAAAAGTGAAA
AATGCCCCATTTCGTGCGCCGATGGTGATCACCGTGATTGCGAAAGTGACCGAGAGTGAAAAAGTCCCGGCATTTGAACA
GCATCTTTCCGCGGGTTGTGCTGTGCAAGCAATGCAAATGGCGGCTGTGGCTCAAGGATTCCAAGGTTTTTGGCGTTCGG
GTGAATGGATGTTCGATACGGAAGTGAGACAAGCGTTTGGCTTACAGGGAGACGATGCCATTGTGGGCTTCCTCTACTTG
GGCAGCGCAGAATGTTCTGCGATGAAAGTGCCAGAGCGTGATCTGGCTAAATTTGTTGAGTATCTATAA

Upstream 100 bases:

>100_bases
TGCGTAAATCGTGAATTTCCACAATAAACAGGCGGTTATATGGCGTAGTGAACTATGCTAAAGTGTAAACGCAAATCGAT
ACCACTATAAGGATTCTTGG

Downstream 100 bases:

>100_bases
CTGTCTATACATACAGTTTTTGTTGATTTTTAAGGGCCACATCCGCTAATGTGGCCCTTTGTTTGTTGAGCTCGAAAAAT
TTGTTATGACCCGTCTGTTT

Product: protein YdjA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MDALDLLLNRRSIGKLAAPAPEGKALENIIRAGLRAPDHGALTPWRFVIAQGSGLQKLSDILVKAAQAKGSEESVVEKVK
NAPFRAPMVITVIAKVTESEKVPAFEQHLSAGCAVQAMQMAAVAQGFQGFWRSGEWMFDTEVRQAFGLQGDDAIVGFLYL
GSAECSAMKVPERDLAKFVEYL

Sequences:

>Translated_182_residues
MDALDLLLNRRSIGKLAAPAPEGKALENIIRAGLRAPDHGALTPWRFVIAQGSGLQKLSDILVKAAQAKGSEESVVEKVK
NAPFRAPMVITVIAKVTESEKVPAFEQHLSAGCAVQAMQMAAVAQGFQGFWRSGEWMFDTEVRQAFGLQGDDAIVGFLYL
GSAECSAMKVPERDLAKFVEYL
>Mature_182_residues
MDALDLLLNRRSIGKLAAPAPEGKALENIIRAGLRAPDHGALTPWRFVIAQGSGLQKLSDILVKAAQAKGSEESVVEKVK
NAPFRAPMVITVIAKVTESEKVPAFEQHLSAGCAVQAMQMAAVAQGFQGFWRSGEWMFDTEVRQAFGLQGDDAIVGFLYL
GSAECSAMKVPERDLAKFVEYL

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

Organism=Escherichia coli, GI1788063, Length=185, Percent_Identity=53.5135135135135, Blast_Score=205, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: NA

Molecular weight: Translated: 19677; Mature: 19677

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALDLLLNRRSIGKLAAPAPEGKALENIIRAGLRAPDHGALTPWRFVIAQGSGLQKLSD
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCHHHHHH
ILVKAAQAKGSEESVVEKVKNAPFRAPMVITVIAKVTESEKVPAFEQHLSAGCAVQAMQM
HHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHH
AAVAQGFQGFWRSGEWMFDTEVRQAFGLQGDDAIVGFLYLGSAECSAMKVPERDLAKFVE
HHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
YL
HC
>Mature Secondary Structure
MDALDLLLNRRSIGKLAAPAPEGKALENIIRAGLRAPDHGALTPWRFVIAQGSGLQKLSD
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCHHHHHH
ILVKAAQAKGSEESVVEKVKNAPFRAPMVITVIAKVTESEKVPAFEQHLSAGCAVQAMQM
HHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHH
AAVAQGFQGFWRSGEWMFDTEVRQAFGLQGDDAIVGFLYLGSAECSAMKVPERDLAKFVE
HHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
YL
HC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]