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The map label for this gene is yciM [H]

Identifier: 27366254

GI number: 27366254

Start: 3045247

End: 3046416

Strand: Reverse

Name: yciM [H]

Synonym: VV1_2978

Alternate gene names: 27366254

Gene position: 3046416-3045247 (Counterclockwise)

Preceding gene: 27366255

Following gene: 27366253

Centisome position: 92.83

GC content: 44.02

Gene sequence:

>1170_bases
ATGCTTGAATTACTCTTCTTGTTACTTCCTATTGCCGCTGCGTATGGTTGGTATATGGGCCATCGCAGTGCACAGGATGA
CAAGCAGAAGCACTCCAATCAGATCTCTCAACAATATGTGACGGGGCTGAACTTACTGCTGTCTGATCAATCGGACAAAG
CGGTAGATCACTTTATTGAGTTGCTTCAAGTCGATAACGACACGATTGATACTCATCTGGCATTAGGAAATCTCTTCCGT
TCTAGAGGGGAAGTTGATCGCGCCATTCGCATACATCAAAATTTGATCTCTCGTTCCGGCTTGACCATTGAACAAAAAAA
CATCGCGCTACAACAGTTGGCGAAAGACTATATGGTGTCGGGTTTTCTGGACCGCGCGGAAAAAATATTCGAGCAGTTAG
TTGAAGAGCCGGAACATCGTGATGCCGCTTTACAGCAATTAGTCTTAATCTACCAGCAGACACGAGAGTGGGATAAAGCG
ATTCACTATGCACACCTGTTAGTAAAGACGGGGAAAAAATCGATTAGAAAAAACATCGCCCATTATTGGTGTGAGCTAGC
GATGTTAGAACAAGCGGATGGCAATAAAACCAAGTCCATCAGCCATTTCAAAAAAGCACTGCAAGAAGATCCTAAATGTG
TTAGAGCATCGATTTCTCTTGGACGTATTTACCTCGAGATGGAAGAATATCGCAAGACGATCGAGTATCTGGAACATGTT
CTAGAACAAGATGCGGATTTCGTTAGTGAAGCGTTGCCTATTCTTGCTGAGTGTTACCACCATCTAGGTCAAGAAGATCA
ACTTGTCGAATTTCTGCGCGCGTGTATTAGTAAAAAAGCAGGTGTGTCTGCTGAGCTAATGCTGGCCCAATTGGTTGCAC
ATCACGAGAGTGTTGGTGCAGCTCAAGAGTTGTTAACAAGACAATTAATTAAAAACCCGACTATGAAAGGTTTTTATAGA
TTGATGGATTATCATCTTGCAGAAGCGGAAGATGGAAGGGCCAAAGAAAGCTTGACGACGCTGCAGGCAATGGTCGGAGA
ACAGCTTAAAATTAAGCCTCATTACCGATGTCGAAAATGTGGCTTTTCTACGCATTCCCTTTATTGGCATTGTCCTTCCT
GTAAAGGGTGGGGGACGATCAAGCCAATCCGAGGATTGGATGGCGAATAG

Upstream 100 bases:

>100_bases
CTTGCAGTTTAAGATGCGATTAAAAATCAGAAAGCTAAACAAACAGATCAAAAAGCAAAGCACACAGGTCGAAAAACAAG
CGTAAGGGCGAATCGGTTTA

Downstream 100 bases:

>100_bases
TTTCAATGCAGCTGACAGAGTTTCTGTCAGCTGCATTTTTTTAACATTTTATTTAATAAGAACCAAAAACAGTTAGGAGA
TGAAATGATCGACCAAAAAG

Product: tetratricopeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MLELLFLLLPIAAAYGWYMGHRSAQDDKQKHSNQISQQYVTGLNLLLSDQSDKAVDHFIELLQVDNDTIDTHLALGNLFR
SRGEVDRAIRIHQNLISRSGLTIEQKNIALQQLAKDYMVSGFLDRAEKIFEQLVEEPEHRDAALQQLVLIYQQTREWDKA
IHYAHLLVKTGKKSIRKNIAHYWCELAMLEQADGNKTKSISHFKKALQEDPKCVRASISLGRIYLEMEEYRKTIEYLEHV
LEQDADFVSEALPILAECYHHLGQEDQLVEFLRACISKKAGVSAELMLAQLVAHHESVGAAQELLTRQLIKNPTMKGFYR
LMDYHLAEAEDGRAKESLTTLQAMVGEQLKIKPHYRCRKCGFSTHSLYWHCPSCKGWGTIKPIRGLDGE

Sequences:

>Translated_389_residues
MLELLFLLLPIAAAYGWYMGHRSAQDDKQKHSNQISQQYVTGLNLLLSDQSDKAVDHFIELLQVDNDTIDTHLALGNLFR
SRGEVDRAIRIHQNLISRSGLTIEQKNIALQQLAKDYMVSGFLDRAEKIFEQLVEEPEHRDAALQQLVLIYQQTREWDKA
IHYAHLLVKTGKKSIRKNIAHYWCELAMLEQADGNKTKSISHFKKALQEDPKCVRASISLGRIYLEMEEYRKTIEYLEHV
LEQDADFVSEALPILAECYHHLGQEDQLVEFLRACISKKAGVSAELMLAQLVAHHESVGAAQELLTRQLIKNPTMKGFYR
LMDYHLAEAEDGRAKESLTTLQAMVGEQLKIKPHYRCRKCGFSTHSLYWHCPSCKGWGTIKPIRGLDGE
>Mature_389_residues
MLELLFLLLPIAAAYGWYMGHRSAQDDKQKHSNQISQQYVTGLNLLLSDQSDKAVDHFIELLQVDNDTIDTHLALGNLFR
SRGEVDRAIRIHQNLISRSGLTIEQKNIALQQLAKDYMVSGFLDRAEKIFEQLVEEPEHRDAALQQLVLIYQQTREWDKA
IHYAHLLVKTGKKSIRKNIAHYWCELAMLEQADGNKTKSISHFKKALQEDPKCVRASISLGRIYLEMEEYRKTIEYLEHV
LEQDADFVSEALPILAECYHHLGQEDQLVEFLRACISKKAGVSAELMLAQLVAHHESVGAAQELLTRQLIKNPTMKGFYR
LMDYHLAEAEDGRAKESLTTLQAMVGEQLKIKPHYRCRKCGFSTHSLYWHCPSCKGWGTIKPIRGLDGE

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=379, Percent_Identity=53.2981530343008, Blast_Score=437, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44568; Mature: 44568

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELLFLLLPIAAAYGWYMGHRSAQDDKQKHSNQISQQYVTGLNLLLSDQSDKAVDHFIE
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LLQVDNDTIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTIEQKNIALQQLAKDYMVS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHH
GFLDRAEKIFEQLVEEPEHRDAALQQLVLIYQQTREWDKAIHYAHLLVKTGKKSIRKNIA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HYWCELAMLEQADGNKTKSISHFKKALQEDPKCVRASISLGRIYLEMEEYRKTIEYLEHV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEQDADFVSEALPILAECYHHLGQEDQLVEFLRACISKKAGVSAELMLAQLVAHHESVGA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AQELLTRQLIKNPTMKGFYRLMDYHLAEAEDGRAKESLTTLQAMVGEQLKIKPHYRCRKC
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHC
GFSTHSLYWHCPSCKGWGTIKPIRGLDGE
CCCCCCEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLELLFLLLPIAAAYGWYMGHRSAQDDKQKHSNQISQQYVTGLNLLLSDQSDKAVDHFIE
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LLQVDNDTIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTIEQKNIALQQLAKDYMVS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHH
GFLDRAEKIFEQLVEEPEHRDAALQQLVLIYQQTREWDKAIHYAHLLVKTGKKSIRKNIA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HYWCELAMLEQADGNKTKSISHFKKALQEDPKCVRASISLGRIYLEMEEYRKTIEYLEHV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEQDADFVSEALPILAECYHHLGQEDQLVEFLRACISKKAGVSAELMLAQLVAHHESVGA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AQELLTRQLIKNPTMKGFYRLMDYHLAEAEDGRAKESLTTLQAMVGEQLKIKPHYRCRKC
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHC
GFSTHSLYWHCPSCKGWGTIKPIRGLDGE
CCCCCCEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]