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The map label for this gene is ccoN [H]

Identifier: 27365914

GI number: 27365914

Start: 2656012

End: 2657445

Strand: Reverse

Name: ccoN [H]

Synonym: VV1_2620

Alternate gene names: 27365914

Gene position: 2657445-2656012 (Counterclockwise)

Preceding gene: 27365917

Following gene: 27365913

Centisome position: 80.97

GC content: 45.61

Gene sequence:

>1434_bases
ATGCAAATGAGCCAAGAAAAGCAGCTTGAACAAAACTACAACTATACAGTCGTTCGTCAATTTACCCTTGTGACCATTTT
ATGGGGTATTGTTGGCATGGCTGTTGGTGTTTTGATTGCCGCTCAATTAGTATGGCCACAGCTCAACTTTGATACGCCGT
GGTTGACGTACAGTCGTTTACGTCCCCTGCATACTAACGCGGTCATTTTCGCGTTTGGTACAAGTGCCTTGTTCGCAACG
TCATACTATGTTGTACAGCGCACCTGTCAAACTCGTCTATTTGGTGGTCCTCTCGTCGCCTTCACCTTCTGGGGTTGGCA
GGCTATTATTCTTGCCGCTGCAATCACTTTGCCACTGGGTTTAACCTCCGGTAAAGAATATGCAGAACTTGAATGGCCAA
TTGATATTGCAATCGCAGTCGTATGGGTTTCATACGCGGTTGTTTTCTTTGGAACCTTAGTGAAACGTAATACTTCTCAC
ATTTACGTAGCAAACTGGTTCTTTGGTGCCTTTATCATTACCGTGGCAGTGCTTCACATTGTGAACAGCATGGCAATCCC
TGTTTCACTTGGTAAATCTTACTCGATTTACTCAGGTGCAGTAGATGCGATGGTTCAATGGTGGTACGGTCACAATGCGG
TAGGTTTCCTTCTTACAGCGGGTTTCCTTGGTATGATGTACTACTTTGTACCAAAGCAAGCTGAGCGTCCTGTTTACTCA
TACCGTTTGTCAATTGTCCACTTCTGGGCTCTTGTTTCTTTGTATATCTGGGCTGGTCCTCACCACTTACATTACACAGC
ACTACCTGACTGGACTCAGTCTCTAGGTATGGTTATGTCTTTGGTTCTATTCGCTCCATCTTGGGGTGGTATGATCAACG
GTATTATGACCCTGTCTGGTGCGTGGCATAAGCTACGTTACGACCCAATTTTGCGTTTCTTGATCGTTTCACTTTCTTTC
TATGGCATGTCGACTTTCGAAGGTCCTATGATGTCAATTAAGACGGTGAACGCATTGTCACACTACACCGACTGGACTGT
TGGTCACGTTCACTCAGGTGCGTTGGGTTGGGTTGCAATGGTATCAATCGGTTCGGTTTACCACTTGATCCCTCGCCTAT
TTAACCAAGAGCGCATGTACTCAGTAAGCCTAATCAATGTTCACTTCTGGTTGGCGACTATCGGTACAGTACTGTACATC
GTTGCAATGTGGATCTCTGGTGTTATGCAGGGTCTGATGTGGCGTGCAGTCAACTCTGACGGTACGTTGACTTACAGCTT
CGTGGAATCTGTTGAGGCTTCTTACCCATTCTACTTCGTACGTTTCTTAGGTGGTTTCATCTTCCTATCGGGTATGTTCC
TAATGGCATACAACACGTACAAAACAGTGACTGCACCTAAGCAAAGCTTAAAAGCAGTTGCACAGCCGGCATAA

Upstream 100 bases:

>100_bases
AATAAAGTGATGATAACGCAGTATTTCTTGAGTTGATTTGGGTGGTGTTACGACGCAAGTCGTGTTGGAAGTAAAGTGTA
GTTAATTAGAAATTGGAAGC

Downstream 100 bases:

>100_bases
GGAGATTGAAGAATGAGTTCTAATTCTAATAATCGCCACGAGATCATTGAACGTAATGTCGGTTTGTTGGCTATCTTTAT
CGTTTTTGCAATCAGTTGGG

Product: cbb3-type cytochrome c oxidase subunit I

Products: NA

Alternate protein names: Cytochrome CBB3 subunit 1; Cytochrome c oxidase polypeptide I homolog; Heme B/copper cytochrome c oxidase subunit [H]

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MQMSQEKQLEQNYNYTVVRQFTLVTILWGIVGMAVGVLIAAQLVWPQLNFDTPWLTYSRLRPLHTNAVIFAFGTSALFAT
SYYVVQRTCQTRLFGGPLVAFTFWGWQAIILAAAITLPLGLTSGKEYAELEWPIDIAIAVVWVSYAVVFFGTLVKRNTSH
IYVANWFFGAFIITVAVLHIVNSMAIPVSLGKSYSIYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAERPVYS
YRLSIVHFWALVSLYIWAGPHHLHYTALPDWTQSLGMVMSLVLFAPSWGGMINGIMTLSGAWHKLRYDPILRFLIVSLSF
YGMSTFEGPMMSIKTVNALSHYTDWTVGHVHSGALGWVAMVSIGSVYHLIPRLFNQERMYSVSLINVHFWLATIGTVLYI
VAMWISGVMQGLMWRAVNSDGTLTYSFVESVEASYPFYFVRFLGGFIFLSGMFLMAYNTYKTVTAPKQSLKAVAQPA

Sequences:

>Translated_477_residues
MQMSQEKQLEQNYNYTVVRQFTLVTILWGIVGMAVGVLIAAQLVWPQLNFDTPWLTYSRLRPLHTNAVIFAFGTSALFAT
SYYVVQRTCQTRLFGGPLVAFTFWGWQAIILAAAITLPLGLTSGKEYAELEWPIDIAIAVVWVSYAVVFFGTLVKRNTSH
IYVANWFFGAFIITVAVLHIVNSMAIPVSLGKSYSIYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAERPVYS
YRLSIVHFWALVSLYIWAGPHHLHYTALPDWTQSLGMVMSLVLFAPSWGGMINGIMTLSGAWHKLRYDPILRFLIVSLSF
YGMSTFEGPMMSIKTVNALSHYTDWTVGHVHSGALGWVAMVSIGSVYHLIPRLFNQERMYSVSLINVHFWLATIGTVLYI
VAMWISGVMQGLMWRAVNSDGTLTYSFVESVEASYPFYFVRFLGGFIFLSGMFLMAYNTYKTVTAPKQSLKAVAQPA
>Mature_477_residues
MQMSQEKQLEQNYNYTVVRQFTLVTILWGIVGMAVGVLIAAQLVWPQLNFDTPWLTYSRLRPLHTNAVIFAFGTSALFAT
SYYVVQRTCQTRLFGGPLVAFTFWGWQAIILAAAITLPLGLTSGKEYAELEWPIDIAIAVVWVSYAVVFFGTLVKRNTSH
IYVANWFFGAFIITVAVLHIVNSMAIPVSLGKSYSIYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAERPVYS
YRLSIVHFWALVSLYIWAGPHHLHYTALPDWTQSLGMVMSLVLFAPSWGGMINGIMTLSGAWHKLRYDPILRFLIVSLSF
YGMSTFEGPMMSIKTVNALSHYTDWTVGHVHSGALGWVAMVSIGSVYHLIPRLFNQERMYSVSLINVHFWLATIGTVLYI
VAMWISGVMQGLMWRAVNSDGTLTYSFVESVEASYPFYFVRFLGGFIFLSGMFLMAYNTYKTVTAPKQSLKAVAQPA

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. Co I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG3278

COG function: function code O; Cbb3-type cytochrome oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004677
- InterPro:   IPR000883 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 53700; Mature: 53700

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMSQEKQLEQNYNYTVVRQFTLVTILWGIVGMAVGVLIAAQLVWPQLNFDTPWLTYSRL
CCCCHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC
RPLHTNAVIFAFGTSALFATSYYVVQRTCQTRLFGGPLVAFTFWGWQAIILAAAITLPLG
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
LTSGKEYAELEWPIDIAIAVVWVSYAVVFFGTLVKRNTSHIYVANWFFGAFIITVAVLHI
CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHH
VNSMAIPVSLGKSYSIYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAERPVYS
HHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH
YRLSIVHFWALVSLYIWAGPHHLHYTALPDWTQSLGMVMSLVLFAPSWGGMINGIMTLSG
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
AWHKLRYDPILRFLIVSLSFYGMSTFEGPMMSIKTVNALSHYTDWTVGHVHSGALGWVAM
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
VSIGSVYHLIPRLFNQERMYSVSLINVHFWLATIGTVLYIVAMWISGVMQGLMWRAVNSD
HHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
GTLTYSFVESVEASYPFYFVRFLGGFIFLSGMFLMAYNTYKTVTAPKQSLKAVAQPA
CCEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHEECCCHHHHHHHCCCC
>Mature Secondary Structure
MQMSQEKQLEQNYNYTVVRQFTLVTILWGIVGMAVGVLIAAQLVWPQLNFDTPWLTYSRL
CCCCHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC
RPLHTNAVIFAFGTSALFATSYYVVQRTCQTRLFGGPLVAFTFWGWQAIILAAAITLPLG
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
LTSGKEYAELEWPIDIAIAVVWVSYAVVFFGTLVKRNTSHIYVANWFFGAFIITVAVLHI
CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHH
VNSMAIPVSLGKSYSIYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAERPVYS
HHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH
YRLSIVHFWALVSLYIWAGPHHLHYTALPDWTQSLGMVMSLVLFAPSWGGMINGIMTLSG
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
AWHKLRYDPILRFLIVSLSFYGMSTFEGPMMSIKTVNALSHYTDWTVGHVHSGALGWVAM
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
VSIGSVYHLIPRLFNQERMYSVSLINVHFWLATIGTVLYIVAMWISGVMQGLMWRAVNSD
HHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
GTLTYSFVESVEASYPFYFVRFLGGFIFLSGMFLMAYNTYKTVTAPKQSLKAVAQPA
CCEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHEECCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8386371; 12597275 [H]