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The map label for this gene is rpfG [H]

Identifier: 27365610

GI number: 27365610

Start: 2308700

End: 2309968

Strand: Reverse

Name: rpfG [H]

Synonym: VV1_2288

Alternate gene names: 27365610

Gene position: 2309968-2308700 (Counterclockwise)

Preceding gene: 27365611

Following gene: 27365608

Centisome position: 70.39

GC content: 46.65

Gene sequence:

>1269_bases
ATGAACAATACATGTGAGTCAGACTCGCTTCATTTTGAAGTAGACCTCAAACAGGCTCTGATTTGGGTGGCACGTGCGTT
GGATTATGTCGGAGTCGATGACACTCACCATAATCACCGTGTCGCCTACATCGCTTACCAATGTGCGCTTGCTCTGGGTT
GGGATTTAAAAAAAGCGGAGTTCAGCTATTTTGCTGGAATGGTGCACGATTGTGGCGTCTCAGAAACGAAAGAGCATTTA
ATGCTGCTAGAGACGCTGATGCCACAAGACGCGCAAGCCCACTGCATTCGTGGTTATCAATCTTTGCAACAGTGTAATAT
TCTGGCCCAGTTTGCTGAGTCAATTTTGTATCACCACACTCGTTGGGATGAGCTTGAAACCTTAGAAGTCTCCCCGTTTA
ACAAAGACATCGCGGCACTTTTGTATCTTTCTGATCGCCTAGATTTTCTAAGGGCTCAATTCACCGATGAATGTCATAGC
GATATGGTGACGCTGTATGAACAAGCCATCGCCGACACCATCATGGCCAATGCGGGTAGCCTCTTCCATCCTGGAATGTG
CGACGTGATGGTAAAACTTATCATGACTGACGGCTTCTGGTTTGCAATGGAATCGGAAAACATCGAAACCATTGGACTCG
GCTTCTCACATATCGATTGGCTGCAAAAACAGCTCACTATCGGTGACTTAATGAGCTTGGGGCTTTTTCTCGCTCGCATT
GTCGATGCCAAAAGCCCGTTTACTTATCAGCATTCACAGAAAGTCGCCGAAATCTCACGCTTCCTCGCTGGAAAAATGTC
GCTTTGCGAACATGACCAAGAGATGATTTTTATTGCCGGCTTAGTGCACGACATTGGCAAGTTAAAAACCCCTGATGACA
TTCTTCATAAGCAAGGAAAACTCAATGATCAGGAGTACACAAGAATCAAACGGCATACCATCGATACCGAGCTTGCTCTG
CATAAAGTCTTCCCCAACTCAAAAATTGCTGAGTGGGCATCCAACCACCACGAAAGGTTGGACGGCTCTGGTTATCCATA
CCACAAAACGGCTACCGATCTGGATCTGCCGTCGAGAATTATTGCCGTCGCCGACGTCTTTCAAGCACTGTCACAAGATC
GCCCCTATCGTCCAAGAATGCCCCAACATGAAATTGAAGCCTTGATGACGGCAATGGTGGATGAAGGCAAACTGTGTCCA
ACCGTTTTTGGTACGTTAAAGCGTCACTTAGATGGCTGCTATCAAATGTCCATTCAAGACAGTGAGTAG

Upstream 100 bases:

>100_bases
TGGAGTTTAAGGTAGTCGGCAAGTGAATGAATCCCCATGAACGTAGCCAACACTGCCGCCGCTTCAAGTAGGAAGGGGAT
AACGTAATGTCGGAACATCA

Downstream 100 bases:

>100_bases
TTTTCTCGGCTCTCTTCAGCAAAATCGTTTGACAAAAAACCGCCAAAAGGCGGTTTTCATTTTAAATAGGCAGGGTTGCA
CACTGGGTCACATCACAGTG

Product: HDIG domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MNNTCESDSLHFEVDLKQALIWVARALDYVGVDDTHHNHRVAYIAYQCALALGWDLKKAEFSYFAGMVHDCGVSETKEHL
MLLETLMPQDAQAHCIRGYQSLQQCNILAQFAESILYHHTRWDELETLEVSPFNKDIAALLYLSDRLDFLRAQFTDECHS
DMVTLYEQAIADTIMANAGSLFHPGMCDVMVKLIMTDGFWFAMESENIETIGLGFSHIDWLQKQLTIGDLMSLGLFLARI
VDAKSPFTYQHSQKVAEISRFLAGKMSLCEHDQEMIFIAGLVHDIGKLKTPDDILHKQGKLNDQEYTRIKRHTIDTELAL
HKVFPNSKIAEWASNHHERLDGSGYPYHKTATDLDLPSRIIAVADVFQALSQDRPYRPRMPQHEIEALMTAMVDEGKLCP
TVFGTLKRHLDGCYQMSIQDSE

Sequences:

>Translated_422_residues
MNNTCESDSLHFEVDLKQALIWVARALDYVGVDDTHHNHRVAYIAYQCALALGWDLKKAEFSYFAGMVHDCGVSETKEHL
MLLETLMPQDAQAHCIRGYQSLQQCNILAQFAESILYHHTRWDELETLEVSPFNKDIAALLYLSDRLDFLRAQFTDECHS
DMVTLYEQAIADTIMANAGSLFHPGMCDVMVKLIMTDGFWFAMESENIETIGLGFSHIDWLQKQLTIGDLMSLGLFLARI
VDAKSPFTYQHSQKVAEISRFLAGKMSLCEHDQEMIFIAGLVHDIGKLKTPDDILHKQGKLNDQEYTRIKRHTIDTELAL
HKVFPNSKIAEWASNHHERLDGSGYPYHKTATDLDLPSRIIAVADVFQALSQDRPYRPRMPQHEIEALMTAMVDEGKLCP
TVFGTLKRHLDGCYQMSIQDSE
>Mature_422_residues
MNNTCESDSLHFEVDLKQALIWVARALDYVGVDDTHHNHRVAYIAYQCALALGWDLKKAEFSYFAGMVHDCGVSETKEHL
MLLETLMPQDAQAHCIRGYQSLQQCNILAQFAESILYHHTRWDELETLEVSPFNKDIAALLYLSDRLDFLRAQFTDECHS
DMVTLYEQAIADTIMANAGSLFHPGMCDVMVKLIMTDGFWFAMESENIETIGLGFSHIDWLQKQLTIGDLMSLGLFLARI
VDAKSPFTYQHSQKVAEISRFLAGKMSLCEHDQEMIFIAGLVHDIGKLKTPDDILHKQGKLNDQEYTRIKRHTIDTELAL
HKVFPNSKIAEWASNHHERLDGSGYPYHKTATDLDLPSRIIAVADVFQALSQDRPYRPRMPQHEIEALMTAMVDEGKLCP
TVFGTLKRHLDGCYQMSIQDSE

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 48087; Mature: 48087

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTCESDSLHFEVDLKQALIWVARALDYVGVDDTHHNHRVAYIAYQCALALGWDLKKAE
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCHHHH
FSYFAGMVHDCGVSETKEHLMLLETLMPQDAQAHCIRGYQSLQQCNILAQFAESILYHHT
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RWDELETLEVSPFNKDIAALLYLSDRLDFLRAQFTDECHSDMVTLYEQAIADTIMANAGS
CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LFHPGMCDVMVKLIMTDGFWFAMESENIETIGLGFSHIDWLQKQLTIGDLMSLGLFLARI
CCCCCHHHHHHHHHHHCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
VDAKSPFTYQHSQKVAEISRFLAGKMSLCEHDQEMIFIAGLVHDIGKLKTPDDILHKQGK
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCC
LNDQEYTRIKRHTIDTELALHKVFPNSKIAEWASNHHERLDGSGYPYHKTATDLDLPSRI
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
IAVADVFQALSQDRPYRPRMPQHEIEALMTAMVDEGKLCPTVFGTLKRHLDGCYQMSIQD
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCC
SE
CC
>Mature Secondary Structure
MNNTCESDSLHFEVDLKQALIWVARALDYVGVDDTHHNHRVAYIAYQCALALGWDLKKAE
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCHHHH
FSYFAGMVHDCGVSETKEHLMLLETLMPQDAQAHCIRGYQSLQQCNILAQFAESILYHHT
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RWDELETLEVSPFNKDIAALLYLSDRLDFLRAQFTDECHSDMVTLYEQAIADTIMANAGS
CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LFHPGMCDVMVKLIMTDGFWFAMESENIETIGLGFSHIDWLQKQLTIGDLMSLGLFLARI
CCCCCHHHHHHHHHHHCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
VDAKSPFTYQHSQKVAEISRFLAGKMSLCEHDQEMIFIAGLVHDIGKLKTPDDILHKQGK
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCC
LNDQEYTRIKRHTIDTELALHKVFPNSKIAEWASNHHERLDGSGYPYHKTATDLDLPSRI
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
IAVADVFQALSQDRPYRPRMPQHEIEALMTAMVDEGKLCPTVFGTLKRHLDGCYQMSIQD
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCC
SE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]