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The map label for this gene is yfgC [C]

Identifier: 27365253

GI number: 27365253

Start: 1901611

End: 1903065

Strand: Reverse

Name: yfgC [C]

Synonym: VV1_1907

Alternate gene names: 27365253

Gene position: 1903065-1901611 (Counterclockwise)

Preceding gene: 27365256

Following gene: 27365252

Centisome position: 57.99

GC content: 49.83

Gene sequence:

>1455_bases
ATGTTAAAACGCGCGCGTACCATTATTAGTTTATCTGTCGCTTTGACTTTAGCTTTGCCAACACCTGCTTGGGCCAATTC
AATTGATTTGCCTGACATTGGGACAGCGGCAGGCGCCACGTTGTCGATCGATCAAGAATTAATCTATGGTGATGCCTACA
TGCGCATGCTGCGCAGCAGCAAACCCATCGTCAATGACCCAGTCATTAACGAGTATATCGATTCTCTCGGCCACCGCTTG
GTTGCCAATGCCAACGATGTAAAAACGCCCTTTCATTTCTTCATGATCCGTGATCGAAACATCAACGCATTCGCCTTTTT
TGGTGGTTACGTCGCCTTGCACTCAGGCCTGTTTCTTCATGCTCGAACAGAAAGTGAGTTGGCGTCCGTTGTGGCGCACG
AAATTGCCCACGTCACTCAACGACATTTGGCTCGCAGCATGGAAGAGCAAGCGAGACGCTCTCCTGCAACCCTTGCGGCA
TTAGCAGGCTCGCTGTTGCTGGCCATCGCCGCGCCCGAAGCGGGTATTGCTGCAATCACTGCAACAACCGCAGGAAATAT
GCAAAGCCAGATCAACTACACGAGAAGTAATGAAAAAGAGGCCGATCGCTTCGGCATCAATACGCTTGCAAAGGCAGGTT
TTGATGTGCAAGCCATGCCCACTTTTTTCTCACGTTTGGCTGATGAATACCGTTACGCAAGCACGCCGCCACCGATGCTG
CTGACGCACCCGCTGCCTGAAGATCGAATTACCGACAGCCGTGCTCGTGCACAGTCGTATCCTCCGCATCGCGTGAATCC
ATCGCTCGACTATCACCTCACTCGAGCTCGAATTGTCGCTCGCTACGCAGGAATTGACGCCGATGCGGCGATGGACTGGT
TTGCTCGTACGGAGAAAAAAGCAACGCCAGACCTCAAACCGGCCTTTGAATATGGCAGAGCGCTGGTGCATTTAGACAAA
AAAGAATTGGATCAAGCTGAAACGATTTTGGCCCGATTAATTAAAAATGAGGGTAACAATCCTTTCTATCTTGATGCGCT
ATCTGATCTTTATATCGAGCAAAAACAGCCAGAGAAAGCGATCGCAATGTTAAAAAGTGCGTTAGAACGCATTCCCAACA
ACAAGGTTCTAACGATAAACTACGCCAATGCTTTGCTCGAAGCAGATAAAACCGAAGAAGCGATCCGTGTATTGCAACGT
TATACGCATGATAATCCAGAAGACACCAATGGATGGCATCTGCTTTCGCGCGCCAATATTGCCATTGGTAACAGTGGTGA
AGACCTCGCGTCACGTGCGGAAATTCTGGCGCTGCAAGCGAACTGGAACAAAGCGATCCAATACTATACGCAAGCCAGCC
AACTGGCCGAGTTAGGGAGTTTGCAGCAGGCAAGATACGACGCGCGCATTGACCAACTCATGGTCCAACGAGATCGCTTC
CTCGCATTACAATAA

Upstream 100 bases:

>100_bases
TTAAGTAAGGGACTGGCATTTTCTTTTGTAACACTTTACGAAACCAATTAGCCAGCAATGGGTCTTAATATTGCAGCTAT
ATGGAGAGTTAATCATTACT

Downstream 100 bases:

>100_bases
ATACATGGAGAATCCTATGTCAGTCGTGATTTATCACAATCCACGCTGCTCAAAGAGCCGTCAAACCCTCGAACTATTGG
AACAACATGGCGTGACGCCT

Product: Zinc metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MLKRARTIISLSVALTLALPTPAWANSIDLPDIGTAAGATLSIDQELIYGDAYMRMLRSSKPIVNDPVINEYIDSLGHRL
VANANDVKTPFHFFMIRDRNINAFAFFGGYVALHSGLFLHARTESELASVVAHEIAHVTQRHLARSMEEQARRSPATLAA
LAGSLLLAIAAPEAGIAAITATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVQAMPTFFSRLADEYRYASTPPPML
LTHPLPEDRITDSRARAQSYPPHRVNPSLDYHLTRARIVARYAGIDADAAMDWFARTEKKATPDLKPAFEYGRALVHLDK
KELDQAETILARLIKNEGNNPFYLDALSDLYIEQKQPEKAIAMLKSALERIPNNKVLTINYANALLEADKTEEAIRVLQR
YTHDNPEDTNGWHLLSRANIAIGNSGEDLASRAEILALQANWNKAIQYYTQASQLAELGSLQQARYDARIDQLMVQRDRF
LALQ

Sequences:

>Translated_484_residues
MLKRARTIISLSVALTLALPTPAWANSIDLPDIGTAAGATLSIDQELIYGDAYMRMLRSSKPIVNDPVINEYIDSLGHRL
VANANDVKTPFHFFMIRDRNINAFAFFGGYVALHSGLFLHARTESELASVVAHEIAHVTQRHLARSMEEQARRSPATLAA
LAGSLLLAIAAPEAGIAAITATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVQAMPTFFSRLADEYRYASTPPPML
LTHPLPEDRITDSRARAQSYPPHRVNPSLDYHLTRARIVARYAGIDADAAMDWFARTEKKATPDLKPAFEYGRALVHLDK
KELDQAETILARLIKNEGNNPFYLDALSDLYIEQKQPEKAIAMLKSALERIPNNKVLTINYANALLEADKTEEAIRVLQR
YTHDNPEDTNGWHLLSRANIAIGNSGEDLASRAEILALQANWNKAIQYYTQASQLAELGSLQQARYDARIDQLMVQRDRF
LALQ
>Mature_484_residues
MLKRARTIISLSVALTLALPTPAWANSIDLPDIGTAAGATLSIDQELIYGDAYMRMLRSSKPIVNDPVINEYIDSLGHRL
VANANDVKTPFHFFMIRDRNINAFAFFGGYVALHSGLFLHARTESELASVVAHEIAHVTQRHLARSMEEQARRSPATLAA
LAGSLLLAIAAPEAGIAAITATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVQAMPTFFSRLADEYRYASTPPPML
LTHPLPEDRITDSRARAQSYPPHRVNPSLDYHLTRARIVARYAGIDADAAMDWFARTEKKATPDLKPAFEYGRALVHLDK
KELDQAETILARLIKNEGNNPFYLDALSDLYIEQKQPEKAIAMLKSALERIPNNKVLTINYANALLEADKTEEAIRVLQR
YTHDNPEDTNGWHLLSRANIAIGNSGEDLASRAEILALQANWNKAIQYYTQASQLAELGSLQQARYDARIDQLMVQRDRF
LALQ

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=478, Percent_Identity=48.744769874477, Blast_Score=440, Evalue=1e-124,
Organism=Escherichia coli, GI87082185, Length=200, Percent_Identity=26.5, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 53853; Mature: 53853

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRARTIISLSVALTLALPTPAWANSIDLPDIGTAAGATLSIDQELIYGDAYMRMLRSS
CCCHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCC
KPIVNDPVINEYIDSLGHRLVANANDVKTPFHFFMIRDRNINAFAFFGGYVALHSGLFLH
CCCCCCCHHHHHHHHHHHEEECCCCCCCCCEEEEEEECCCCCEEEEHHHHHHHHCCEEEE
ARTESELASVVAHEIAHVTQRHLARSMEEQARRSPATLAALAGSLLLAIAAPEAGIAAIT
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCEEEEE
ATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVQAMPTFFSRLADEYRYASTPPPML
EECCCCHHHHCCCCCCCCHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEE
LTHPLPEDRITDSRARAQSYPPHRVNPSLDYHLTRARIVARYAGIDADAAMDWFARTEKK
EECCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
ATPDLKPAFEYGRALVHLDKKELDQAETILARLIKNEGNNPFYLDALSDLYIEQKQPEKA
CCCCCCHHHHHCHHEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHCCCCHHHH
IAMLKSALERIPNNKVLTINYANALLEADKTEEAIRVLQRYTHDNPEDTNGWHLLSRANI
HHHHHHHHHHCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCE
AIGNSGEDLASRAEILALQANWNKAIQYYTQASQLAELGSLQQARYDARIDQLMVQRDRF
EECCCCHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALQ
CCCC
>Mature Secondary Structure
MLKRARTIISLSVALTLALPTPAWANSIDLPDIGTAAGATLSIDQELIYGDAYMRMLRSS
CCCHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCC
KPIVNDPVINEYIDSLGHRLVANANDVKTPFHFFMIRDRNINAFAFFGGYVALHSGLFLH
CCCCCCCHHHHHHHHHHHEEECCCCCCCCCEEEEEEECCCCCEEEEHHHHHHHHCCEEEE
ARTESELASVVAHEIAHVTQRHLARSMEEQARRSPATLAALAGSLLLAIAAPEAGIAAIT
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCEEEEE
ATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVQAMPTFFSRLADEYRYASTPPPML
EECCCCHHHHCCCCCCCCHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEE
LTHPLPEDRITDSRARAQSYPPHRVNPSLDYHLTRARIVARYAGIDADAAMDWFARTEKK
EECCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
ATPDLKPAFEYGRALVHLDKKELDQAETILARLIKNEGNNPFYLDALSDLYIEQKQPEKA
CCCCCCHHHHHCHHEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHCCCCHHHH
IAMLKSALERIPNNKVLTINYANALLEADKTEEAIRVLQRYTHDNPEDTNGWHLLSRANI
HHHHHHHHHHCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCE
AIGNSGEDLASRAEILALQANWNKAIQYYTQASQLAELGSLQQARYDARIDQLMVQRDRF
EECCCCHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]