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The map label for this gene is ompK [H]

Identifier: 27365163

GI number: 27365163

Start: 1808123

End: 1808959

Strand: Reverse

Name: ompK [H]

Synonym: VV1_1811

Alternate gene names: 27365163

Gene position: 1808959-1808123 (Counterclockwise)

Preceding gene: 326423896

Following gene: 326423894

Centisome position: 55.12

GC content: 42.41

Gene sequence:

>837_bases
ATGCGTAAATCACTATTAACTCTTGGTCTGTTAGCAGCAACTTCAGCACCAGTTATGGCCGCTGACTACTCAGATGGCGA
TATCCACAAAAACGATTACAAGTGGATGCAATTTAACCTAATGGCTGCAATTGACGAGCTACCAGGTGAATCTTCACATG
ATTACCTAGAGATGGAATTTGGTGGTCGCTCTGGTATTTTCGACCTATATGGCTACGTTGATGTGTTCAACCTGACATCA
GACAAAGGCAGTGATAAGTCTGGTAAAGATAAAATCTTTATGAAGTTTGCACCTCGTATGTCTCTAGATGCGGTAACAGG
CAAAGACCTTTCTTTCGGTCCAGTCCAAGAGCTTTATGTTGCAACTCTTATGGAATGGGGCGGCGGTGGTGCAACAAACT
GTACACCAGACCAATCTACTTGTGTTCCAAGTGAAACAGTAAACACACAAAAGATCGGTCTTGGTTCTGATGTGATGGTT
CCTTGGTTGGGCAAAATCGGCCTAAATCTATACGGAACTTACGATTCAAACATGAAAGATTGGAACGGTTTCCAAATCTC
GACAAACTGGTTCAAGCCATTCTACTTCTTTGAAAACGGTTCTTTCATTTCTTACCAAGGTTACATTGACTACCAATTTG
GTATGAAAGATGACAACAAAGCTCTAAACACCTCTAACGGTGGTGCTATGTTTAACGGTATCTACTGGCACTCAGATCGC
TTTGCAGTAGGTTACGGTCTTAAAGGCTACAAAGACGTTTATGGCCTAAAAGATGACGGTCTAGCTGGCAAGACATCTGG
CTTTGGTCACTACGTAGCAGTGACTTACAAGTTCTAA

Upstream 100 bases:

>100_bases
TTTATTTGAGATTTAAATCGCTATGATGCGCGCAAATCGGATAACACGTAGCGCAAGGATTAGCGTCTAAACACCGTTAC
AAATATAGAGAGTTCCCCTT

Downstream 100 bases:

>100_bases
TTGAACCCCTAAGTAGATCAAAAATGGCGCCTGTTGGCGCCATTTTTATTTGCTTTCCTTGTTTCCCTCATTATCCTTGC
AGCAAACCTTTTTACTGAGA

Product: outer membrane protein OmpK

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MRKSLLTLGLLAATSAPVMAADYSDGDIHKNDYKWMQFNLMAAIDELPGESSHDYLEMEFGGRSGIFDLYGYVDVFNLTS
DKGSDKSGKDKIFMKFAPRMSLDAVTGKDLSFGPVQELYVATLMEWGGGGATNCTPDQSTCVPSETVNTQKIGLGSDVMV
PWLGKIGLNLYGTYDSNMKDWNGFQISTNWFKPFYFFENGSFISYQGYIDYQFGMKDDNKALNTSNGGAMFNGIYWHSDR
FAVGYGLKGYKDVYGLKDDGLAGKTSGFGHYVAVTYKF

Sequences:

>Translated_278_residues
MRKSLLTLGLLAATSAPVMAADYSDGDIHKNDYKWMQFNLMAAIDELPGESSHDYLEMEFGGRSGIFDLYGYVDVFNLTS
DKGSDKSGKDKIFMKFAPRMSLDAVTGKDLSFGPVQELYVATLMEWGGGGATNCTPDQSTCVPSETVNTQKIGLGSDVMV
PWLGKIGLNLYGTYDSNMKDWNGFQISTNWFKPFYFFENGSFISYQGYIDYQFGMKDDNKALNTSNGGAMFNGIYWHSDR
FAVGYGLKGYKDVYGLKDDGLAGKTSGFGHYVAVTYKF
>Mature_278_residues
MRKSLLTLGLLAATSAPVMAADYSDGDIHKNDYKWMQFNLMAAIDELPGESSHDYLEMEFGGRSGIFDLYGYVDVFNLTS
DKGSDKSGKDKIFMKFAPRMSLDAVTGKDLSFGPVQELYVATLMEWGGGGATNCTPDQSTCVPSETVNTQKIGLGSDVMV
PWLGKIGLNLYGTYDSNMKDWNGFQISTNWFKPFYFFENGSFISYQGYIDYQFGMKDDNKALNTSNGGAMFNGIYWHSDR
FAVGYGLKGYKDVYGLKDDGLAGKTSGFGHYVAVTYKF

Specific function: Serves as receptor for a broad-host-range vibriophage, KVP40 [H]

COG id: COG3248

COG function: function code M; Nucleoside-binding outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli tsx [H]

Homologues:

Organism=Escherichia coli, GI1786612, Length=189, Percent_Identity=29.1005291005291, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003055
- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 30794; Mature: 30794

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSLLTLGLLAATSAPVMAADYSDGDIHKNDYKWMQFNLMAAIDELPGESSHDYLEMEF
CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEHHHHHCCCCCCCCEEEEEE
GGRSGIFDLYGYVDVFNLTSDKGSDKSGKDKIFMKFAPRMSLDAVTGKDLSFGPVQELYV
CCCCCEEEHCCEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHH
ATLMEWGGGGATNCTPDQSTCVPSETVNTQKIGLGSDVMVPWLGKIGLNLYGTYDSNMKD
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHCCHHCCCCEEEEEECCCCCC
WNGFQISTNWFKPFYFFENGSFISYQGYIDYQFGMKDDNKALNTSNGGAMFNGIYWHSDR
CCCEEEECCCCCEEEEEECCCEEEEECEEEEECCCCCCCCEEECCCCCEEEEEEEEECCC
FAVGYGLKGYKDVYGLKDDGLAGKTSGFGHYVAVTYKF
EEEECCCCCHHHHCCCCCCCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MRKSLLTLGLLAATSAPVMAADYSDGDIHKNDYKWMQFNLMAAIDELPGESSHDYLEMEF
CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEHHHHHCCCCCCCCEEEEEE
GGRSGIFDLYGYVDVFNLTSDKGSDKSGKDKIFMKFAPRMSLDAVTGKDLSFGPVQELYV
CCCCCEEEHCCEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHH
ATLMEWGGGGATNCTPDQSTCVPSETVNTQKIGLGSDVMVPWLGKIGLNLYGTYDSNMKD
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHCCHHCCCCEEEEEECCCCCC
WNGFQISTNWFKPFYFFENGSFISYQGYIDYQFGMKDDNKALNTSNGGAMFNGIYWHSDR
CCCEEEECCCCCEEEEEECCCEEEEECEEEEECCCCCCCCEEECCCCCEEEEEEEEECCC
FAVGYGLKGYKDVYGLKDDGLAGKTSGFGHYVAVTYKF
EEEECCCCCHHHHCCCCCCCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]