| Definition | Vibrio vulnificus CMCP6 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_004459 |
| Length | 3,281,866 |
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The map label for this gene is ygjI [H]
Identifier: 27365120
GI number: 27365120
Start: 1752065
End: 1753501
Strand: Reverse
Name: ygjI [H]
Synonym: VV1_1764
Alternate gene names: 27365120
Gene position: 1753501-1752065 (Counterclockwise)
Preceding gene: 27365121
Following gene: 326423884
Centisome position: 53.43
GC content: 50.8
Gene sequence:
>1437_bases ATGTCTGAATCACTGCGTGGCACCATAGGCAAATTTGCCTTGCTGTCGATGACCTTTGCCGCGGTTTTCAACGTGCGCAA TATCGTCAACAACAACATCGAACTGGGGCTCAGCTCCGCCCCCATTTTTCTCTTAGCAACCGTGGTCTATTTCATTCCAT TCGTGTTCATTATTGCCGAATTTGTTTCCGCCAATAAGAACTCAGAATCCGGCATGTATGACTGGTTGAAAAAGCCTTTA GGCAGCAAAGCCGCTTATTTGGGCTCGTTTCTCTACTGGTTTGTGAACCTGTTCTGGTTTGTTTCCTTACTGCCTAACGT CATTGCCTATGCGTCTTACGCCATGTTGGGTTACGAATACAGCTTCTCACCCATGGTGACGTCACTCATCTCGATTGTAT TGTTTGCCTTCGCCACTCACATCTCTACCAAAGGCGCGAGTTGGTTGGGCAAGATCTCTGAAATGGTTGCTTATGGCGTG TTTGCTTTGTTTGCCATTTATGTATTGGGCGCGCTGATGGCCCTTGGTGGTGACCACACACCCGCCGAGCCCATCACGTT ACAAGCGATGACCCCAACCATCAACTGGGCAACCCTTGGCATCATGTGTTGGATTTTCCAAGCCGCAGGTGGTGCGGAAA CCGCAGCCGCTTACCTTAACGACGTCAAAGGCGGCCATAAATCCTTTATCAAAGTGATCATCATCGCCGGTGTAGTAATC GGTGCGATGTACGCCATCGGCTCGCTCTTGGTCAACGTGTTTGTTGCGCGTGAAGACCTCACTTACGCTGGCGGCATGGT GGAAATTTTCACTGGCATGGCGAATTACTTTGGCATCTCGCCAACTTTGGTTGGCCGTTTCGTTGGCATCATTTTGTTCA TCGCGATGTTTGGCTCAATGATGATGTGGACCGCGGCTCCGGTGAAAATTCACTTCTCCGAAATTCCAAAAGGCGTGTAC GGTGAAAAAACCACCGAGCTGAACGAACACGGCGTTCCTGTCCGTGCGGCGTGGTGGCAGTTTGCCTTTGTGTTCGTGAT GCTGGTGGTGAATGGCTTTGGTTCGGAGTCGGTGCAAGACATGATGAATCAAGCGATCAACCTCACCGCAGGAACGGCAA TGCTTCCGCCGATCTTCATCATGGTGGCGTACTTTGTCTTCCGCTTGAAGTTCGACGATACCCCACGAGATTTCCGCATG GGTTCGCGCAAAGTGGGGATGAGCATCGTATCCGTGCTGATTGCCATCTTTGTTGTCAGCATGACGGCATCGGCCTTCCC AACCGGGGTTGACTTAGTCAGAGCCTTCTTTATCAACGTATTTATGACCGCGGTGTTCTCTGGCCTCGCTTGGTGGTGGA TCTCTCGCTTTGAGAAGAAGCAGATGATGAACACCCGTCAACAAGAGACCGAGCACACCGTCTCGCAAACTCAATAA
Upstream 100 bases:
>100_bases TTCACCCTGCCCGCCCCCATAACAACTCTAATGGCTGGCAGATTATTTTCATTCACTGATCCATTTTTTTGTTTTACTGC AGACGGATACGGGAGGAACT
Downstream 100 bases:
>100_bases CGCAAATAACAAAAGCGCCAATCCCCTTTGGCGCTTAACCCTTTTCTCCTATCAGAGACTTTTCTATGAAGATGAAACCC CTTATTGCTGCTATGACTCT
Product: putative oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 478; Mature: 477
Protein sequence:
>478_residues MSESLRGTIGKFALLSMTFAAVFNVRNIVNNNIELGLSSAPIFLLATVVYFIPFVFIIAEFVSANKNSESGMYDWLKKPL GSKAAYLGSFLYWFVNLFWFVSLLPNVIAYASYAMLGYEYSFSPMVTSLISIVLFAFATHISTKGASWLGKISEMVAYGV FALFAIYVLGALMALGGDHTPAEPITLQAMTPTINWATLGIMCWIFQAAGGAETAAAYLNDVKGGHKSFIKVIIIAGVVI GAMYAIGSLLVNVFVAREDLTYAGGMVEIFTGMANYFGISPTLVGRFVGIILFIAMFGSMMMWTAAPVKIHFSEIPKGVY GEKTTELNEHGVPVRAAWWQFAFVFVMLVVNGFGSESVQDMMNQAINLTAGTAMLPPIFIMVAYFVFRLKFDDTPRDFRM GSRKVGMSIVSVLIAIFVVSMTASAFPTGVDLVRAFFINVFMTAVFSGLAWWWISRFEKKQMMNTRQQETEHTVSQTQ
Sequences:
>Translated_478_residues MSESLRGTIGKFALLSMTFAAVFNVRNIVNNNIELGLSSAPIFLLATVVYFIPFVFIIAEFVSANKNSESGMYDWLKKPL GSKAAYLGSFLYWFVNLFWFVSLLPNVIAYASYAMLGYEYSFSPMVTSLISIVLFAFATHISTKGASWLGKISEMVAYGV FALFAIYVLGALMALGGDHTPAEPITLQAMTPTINWATLGIMCWIFQAAGGAETAAAYLNDVKGGHKSFIKVIIIAGVVI GAMYAIGSLLVNVFVAREDLTYAGGMVEIFTGMANYFGISPTLVGRFVGIILFIAMFGSMMMWTAAPVKIHFSEIPKGVY GEKTTELNEHGVPVRAAWWQFAFVFVMLVVNGFGSESVQDMMNQAINLTAGTAMLPPIFIMVAYFVFRLKFDDTPRDFRM GSRKVGMSIVSVLIAIFVVSMTASAFPTGVDLVRAFFINVFMTAVFSGLAWWWISRFEKKQMMNTRQQETEHTVSQTQ >Mature_477_residues SESLRGTIGKFALLSMTFAAVFNVRNIVNNNIELGLSSAPIFLLATVVYFIPFVFIIAEFVSANKNSESGMYDWLKKPLG SKAAYLGSFLYWFVNLFWFVSLLPNVIAYASYAMLGYEYSFSPMVTSLISIVLFAFATHISTKGASWLGKISEMVAYGVF ALFAIYVLGALMALGGDHTPAEPITLQAMTPTINWATLGIMCWIFQAAGGAETAAAYLNDVKGGHKSFIKVIIIAGVVIG AMYAIGSLLVNVFVAREDLTYAGGMVEIFTGMANYFGISPTLVGRFVGIILFIAMFGSMMMWTAAPVKIHFSEIPKGVYG EKTTELNEHGVPVRAAWWQFAFVFVMLVVNGFGSESVQDMMNQAINLTAGTAMLPPIFIMVAYFVFRLKFDDTPRDFRMG SRKVGMSIVSVLIAIFVVSMTASAFPTGVDLVRAFFINVFMTAVFSGLAWWWISRFEKKQMMNTRQQETEHTVSQTQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]
Homologues:
Organism=Escherichia coli, GI48994921, Length=469, Percent_Identity=56.2899786780384, Blast_Score=533, Evalue=1e-153, Organism=Escherichia coli, GI87082380, Length=423, Percent_Identity=24.822695035461, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI87081798, Length=425, Percent_Identity=22.3529411764706, Blast_Score=95, Evalue=8e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004841 - InterPro: IPR002293 [H]
Pfam domain/function: PF00324 AA_permease [H]
EC number: NA
Molecular weight: Translated: 52675; Mature: 52543
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: PS00589 PTS_HPR_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESLRGTIGKFALLSMTFAAVFNVRNIVNNNIELGLSSAPIFLLATVVYFIPFVFIIAE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHH FVSANKNSESGMYDWLKKPLGSKAAYLGSFLYWFVNLFWFVSLLPNVIAYASYAMLGYEY HHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SFSPMVTSLISIVLFAFATHISTKGASWLGKISEMVAYGVFALFAIYVLGALMALGGDHT CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PAEPITLQAMTPTINWATLGIMCWIFQAAGGAETAAAYLNDVKGGHKSFIKVIIIAGVVI CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH GAMYAIGSLLVNVFVAREDLTYAGGMVEIFTGMANYFGISPTLVGRFVGIILFIAMFGSM HHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH MMWTAAPVKIHFSEIPKGVYGEKTTELNEHGVPVRAAWWQFAFVFVMLVVNGFGSESVQD HHHHCCCCEEEHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH MMNQAINLTAGTAMLPPIFIMVAYFVFRLKFDDTPRDFRMGSRKVGMSIVSVLIAIFVVS HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH MTASAFPTGVDLVRAFFINVFMTAVFSGLAWWWISRFEKKQMMNTRQQETEHTVSQTQ HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SESLRGTIGKFALLSMTFAAVFNVRNIVNNNIELGLSSAPIFLLATVVYFIPFVFIIAE CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHH FVSANKNSESGMYDWLKKPLGSKAAYLGSFLYWFVNLFWFVSLLPNVIAYASYAMLGYEY HHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SFSPMVTSLISIVLFAFATHISTKGASWLGKISEMVAYGVFALFAIYVLGALMALGGDHT CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PAEPITLQAMTPTINWATLGIMCWIFQAAGGAETAAAYLNDVKGGHKSFIKVIIIAGVVI CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH GAMYAIGSLLVNVFVAREDLTYAGGMVEIFTGMANYFGISPTLVGRFVGIILFIAMFGSM HHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH MMWTAAPVKIHFSEIPKGVYGEKTTELNEHGVPVRAAWWQFAFVFVMLVVNGFGSESVQD HHHHCCCCEEEHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH MMNQAINLTAGTAMLPPIFIMVAYFVFRLKFDDTPRDFRMGSRKVGMSIVSVLIAIFVVS HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH MTASAFPTGVDLVRAFFINVFMTAVFSGLAWWWISRFEKKQMMNTRQQETEHTVSQTQ HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]