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The map label for this gene is yhbU [H]

Identifier: 27365073

GI number: 27365073

Start: 1698899

End: 1699912

Strand: Reverse

Name: yhbU [H]

Synonym: VV1_1713

Alternate gene names: 27365073

Gene position: 1699912-1698899 (Counterclockwise)

Preceding gene: 326423875

Following gene: 326423874

Centisome position: 51.8

GC content: 50.89

Gene sequence:

>1014_bases
ATGGAACTCCTTTGTCCAGCAGGTAATCTTCCTGCTCTGAAAACCGCCATCGACTGCGGTGCCGATGCGGTGTATATCGG
CTTTAAAGATGATACAAATGCCCGTCATTTCGCTGGACTGAACTTCAGCGGGAAAAAACTCGAGAAAGCGGTTCAATACG
TCCACGATCACCAGAAAAAAATTCACGTCGCCTTGAACACGTTTGCGCATCCAGATGGCTTTGAGCGTTGGACAAATGCG
GTCGATATGGCGGCGGCATTGGGTATCGATGCTCTGATCGTTGCCGACATCGCTGTGTTAGAGTATGCAGCACGAAAATA
CCCTCACCTTGAACTGCATTTATCGGTTCAAGCCTCGGCCACCAATGTCGCAGCGGTCGAGTTTTATCAGCAGAATTTCA
ATGTTAAACGCGTTGTACTACCGCGCGTATTGTCGATTCATCAAGTGAAGCAACTGTCACGTAATATCCCACAAGGGGTA
GAGTTGGAGGTTTTTGCCTTTGGTAGCTTGTGCATCATGTCAGAAGGCCGCTGCTACTTGTCTTCCTATTTAACGGGAGA
GTCTCCCAATACCGTCGGCGCTTGCTCACCCGCCAAATATGTGCGCTGGCAAGAAACACCAACGGGGTTAGAGTCACGTC
TCAACAACATTTTGATCGACAAATACGGTCATGGTGAGAACGCAGGCTATCCGACTCTCTGTAAAGGCCGCTTTGATACC
CACATAGAGGGGGAATCCAAACGCTACCACGCACTAGAAGAGCCAACCAGTCTCAACACGCTGTCGTTGCTGCCTGAACT
GTTTGCCGCCAATGTCGCCTCGGTAAAAATCGAAGGCCGTCAGCGTAGCCCTGCCTATGTCGAGCAAGTGACTCGAACTT
GGCGTGCGGCGATTGATCGTTACCAAGCGAATCCGCAAGCCTACCAAGTGGAAGAGGCTTGGAATGCCGCACTGGCGAAT
GTCTCCGAAGGGACACAAACCACGCTCGGCGCTTATCATCGTCAATGGCAATAA

Upstream 100 bases:

>100_bases
ATCTCAATTTATTGCGCCAAACCTAACTTACATCAATTCTGCTATTCATATTCCTTCATAAAATGCCCACACCCTTTTCG
TCTCAATTTGTAGTGAGCAT

Downstream 100 bases:

>100_bases
GGATTCAAGGAAACAAGATGAAATACTCACTCGGTCCGCTACTTTACTTCTGGCCCAAACAGAACGTTGAAGACTTTTAC
CATCAAGCGAAAAACAGCTC

Product: putative protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFSGKKLEKAVQYVHDHQKKIHVALNTFAHPDGFERWTNA
VDMAAALGIDALIVADIAVLEYAARKYPHLELHLSVQASATNVAAVEFYQQNFNVKRVVLPRVLSIHQVKQLSRNIPQGV
ELEVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPAKYVRWQETPTGLESRLNNILIDKYGHGENAGYPTLCKGRFDT
HIEGESKRYHALEEPTSLNTLSLLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDRYQANPQAYQVEEAWNAALAN
VSEGTQTTLGAYHRQWQ

Sequences:

>Translated_337_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFSGKKLEKAVQYVHDHQKKIHVALNTFAHPDGFERWTNA
VDMAAALGIDALIVADIAVLEYAARKYPHLELHLSVQASATNVAAVEFYQQNFNVKRVVLPRVLSIHQVKQLSRNIPQGV
ELEVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPAKYVRWQETPTGLESRLNNILIDKYGHGENAGYPTLCKGRFDT
HIEGESKRYHALEEPTSLNTLSLLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDRYQANPQAYQVEEAWNAALAN
VSEGTQTTLGAYHRQWQ
>Mature_337_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFSGKKLEKAVQYVHDHQKKIHVALNTFAHPDGFERWTNA
VDMAAALGIDALIVADIAVLEYAARKYPHLELHLSVQASATNVAAVEFYQQNFNVKRVVLPRVLSIHQVKQLSRNIPQGV
ELEVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPAKYVRWQETPTGLESRLNNILIDKYGHGENAGYPTLCKGRFDT
HIEGESKRYHALEEPTSLNTLSLLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDRYQANPQAYQVEEAWNAALAN
VSEGTQTTLGAYHRQWQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=337, Percent_Identity=74.1839762611276, Blast_Score=528, Evalue=1e-151,
Organism=Escherichia coli, GI1788397, Length=319, Percent_Identity=30.7210031347962, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI87081910, Length=301, Percent_Identity=32.890365448505, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 37378; Mature: 37378

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFSGKKLEKAVQYVHDHQKK
CCEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHE
IHVALNTFAHPDGFERWTNAVDMAAALGIDALIVADIAVLEYAARKYPHLELHLSVQASA
EEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
TNVAAVEFYQQNFNVKRVVLPRVLSIHQVKQLSRNIPQGVELEVFAFGSLCIMSEGRCYL
CCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEECCCEEE
SSYLTGESPNTVGACSPAKYVRWQETPTGLESRLNNILIDKYGHGENAGYPTLCKGRFDT
HHHHCCCCCCCCCCCCCHHCEEECCCCCHHHHHHHHEEEECCCCCCCCCCCCEECCCCCC
HIEGESKRYHALEEPTSLNTLSLLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDR
CCCCCCCCEECCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
YQANPQAYQVEEAWNAALANVSEGTQTTLGAYHRQWQ
HCCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFSGKKLEKAVQYVHDHQKK
CCEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHE
IHVALNTFAHPDGFERWTNAVDMAAALGIDALIVADIAVLEYAARKYPHLELHLSVQASA
EEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
TNVAAVEFYQQNFNVKRVVLPRVLSIHQVKQLSRNIPQGVELEVFAFGSLCIMSEGRCYL
CCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEECCCEEE
SSYLTGESPNTVGACSPAKYVRWQETPTGLESRLNNILIDKYGHGENAGYPTLCKGRFDT
HHHHCCCCCCCCCCCCCHHCEEECCCCCHHHHHHHHEEEECCCCCCCCCCCCEECCCCCC
HIEGESKRYHALEEPTSLNTLSLLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDR
CCCCCCCCEECCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
YQANPQAYQVEEAWNAALANVSEGTQTTLGAYHRQWQ
HCCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]